Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10e19
(289 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P17500 Cluster: Major capsid protein; n=15; Nucleopolyh... 108 3e-23
UniRef50_Q0N423 Cluster: VP39; n=1; Clanis bilineata nucleopolyh... 86 2e-16
UniRef50_Q8QLD5 Cluster: Vp39 capsid; n=1; Mamestra configurata ... 83 9e-16
UniRef50_P35840 Cluster: Major capsid protein; n=12; Nucleopolyh... 79 1e-14
UniRef50_Q80LM9 Cluster: Major capsid protein VP39; n=1; Adoxoph... 75 4e-13
UniRef50_Q9DWZ8 Cluster: VP39; n=2; Nucleopolyhedrovirus|Rep: VP... 58 4e-08
UniRef50_Q7T9T4 Cluster: Vp39-capsid; n=5; Granulovirus|Rep: Vp3... 53 1e-06
UniRef50_Q9DVV4 Cluster: PxORF79 peptide; n=1; Plutella xylostel... 50 7e-06
UniRef50_Q6QXM6 Cluster: ORF086; n=1; Agrotis segetum granulovir... 50 1e-05
UniRef50_Q9PYT2 Cluster: ORF111; n=4; Granulovirus|Rep: ORF111 -... 46 1e-04
UniRef50_Q8JRX1 Cluster: Capsid protein VP39; n=1; Phthorimaea o... 45 3e-04
UniRef50_Q8YXH3 Cluster: Zam protein; n=6; Cyanobacteria|Rep: Za... 32 2.1
UniRef50_Q01W69 Cluster: Putative uncharacterized protein precur... 31 6.5
UniRef50_A4HF56 Cluster: Putative uncharacterized protein; n=1; ... 31 6.5
UniRef50_UPI0000D55767 Cluster: PREDICTED: similar to CG9564-PA;... 30 8.6
UniRef50_Q5GSI9 Cluster: Ankyrin repeat-containing protein and p... 30 8.6
UniRef50_A0RRG8 Cluster: Putative uncharacterized protein; n=1; ... 30 8.6
>UniRef50_P17500 Cluster: Major capsid protein; n=15;
Nucleopolyhedrovirus|Rep: Major capsid protein - Orgyia
pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
Length = 351
Score = 108 bits (259), Expect = 3e-23
Identities = 48/75 (64%), Positives = 59/75 (78%)
Frame = -3
Query: 230 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMS 51
MAL+ G++ R+ N CIF +I FD+C+TY+SPCS DA DDGWFIC+ HL RFKMS
Sbjct: 1 MALVSPGVSSRRS-TNHCIFGAIEPFDSCVTYRSPCSSDASVDDGWFICDYHLKLRFKMS 59
Query: 50 KMVLPIFDEDDNQFK 6
KMVLPI+DEDDNQ+K
Sbjct: 60 KMVLPIYDEDDNQYK 74
>UniRef50_Q0N423 Cluster: VP39; n=1; Clanis bilineata
nucleopolyhedrosis virus|Rep: VP39 - Clanis bilineata
nucleopolyhedrosis virus
Length = 350
Score = 85.8 bits (203), Expect = 2e-16
Identities = 41/70 (58%), Positives = 49/70 (70%)
Frame = -3
Query: 230 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMS 51
MAL+ GMA ++ N CIF S+ FDAC Y+SPCS DA ++DGW IC+ HL RFKM
Sbjct: 1 MALVVSGMATGRIN-NYCIFGSVQPFDACGPYRSPCSDDAKNNDGWLICDYHLSTRFKME 59
Query: 50 KMVLPIFDED 21
KMVLPI D D
Sbjct: 60 KMVLPIPDAD 69
>UniRef50_Q8QLD5 Cluster: Vp39 capsid; n=1; Mamestra configurata
NPV-A|Rep: Vp39 capsid - Mamestra configurata NPV-A
Length = 325
Score = 83.4 bits (197), Expect = 9e-16
Identities = 40/70 (57%), Positives = 45/70 (64%)
Frame = -3
Query: 230 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMS 51
MAL P G Q + N CIF +I FD C TY SPCS DA +DGWFIC HL RF+M
Sbjct: 1 MALTPYGS--NQPQSNNCIFGAIRPFDTCRTYSSPCSNDASQEDGWFICEYHLSIRFRME 58
Query: 50 KMVLPIFDED 21
KMVLPI D +
Sbjct: 59 KMVLPIPDAE 68
>UniRef50_P35840 Cluster: Major capsid protein; n=12;
Nucleopolyhedrovirus|Rep: Major capsid protein -
Lymantria dispar multicapsid nuclear polyhedrosis virus
(LdMNPV)
Length = 356
Score = 79.4 bits (187), Expect = 1e-14
Identities = 35/72 (48%), Positives = 49/72 (68%)
Frame = -3
Query: 230 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMS 51
MAL+ ++ ++R N C+F ++ FD C Y SPCSPD+ ++DGWFIC+ H RFK+
Sbjct: 1 MALVSGALSTNRLR-NYCVFGAVQPFDNCRAYGSPCSPDSTNNDGWFICDYHSSIRFKIE 59
Query: 50 KMVLPIFDEDDN 15
KMVLPI D + N
Sbjct: 60 KMVLPIPDAEGN 71
>UniRef50_Q80LM9 Cluster: Major capsid protein VP39; n=1; Adoxophyes
honmai NPV|Rep: Major capsid protein VP39 - Adoxophyes
honmai nucleopolyhedrovirus
Length = 312
Score = 74.5 bits (175), Expect = 4e-13
Identities = 35/71 (49%), Positives = 43/71 (60%)
Frame = -3
Query: 230 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMS 51
MAL+P G+ + N CIFA + SFDAC Y + CS DA +DGW+IC H FKM
Sbjct: 1 MALVPAGLTSSRSNSN-CIFAGVQSFDACYRYPNECSKDADSNDGWYICEYHASVHFKME 59
Query: 50 KMVLPIFDEDD 18
KM L I D D+
Sbjct: 60 KMSLAIPDADN 70
>UniRef50_Q9DWZ8 Cluster: VP39; n=2; Nucleopolyhedrovirus|Rep: VP39
- Spodoptera litura multicapsid nucleopolyhedrovirus
(SpltMNPV)
Length = 302
Score = 58.0 bits (134), Expect = 4e-08
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = -3
Query: 230 MALMPVGMAPRQMRVNRCIFASI--VSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFK 57
MAL+ G A +M+ N CIF + + F+ C Y+SPCS DA +DG F+C HL + FK
Sbjct: 1 MALVSGGNANSRMK-NYCIFQGVRPIEFNQCSNYRSPCSDDASQNDGVFMCQYHLSRFFK 59
Query: 56 MSKMVLPIFD 27
+ K + I D
Sbjct: 60 IEKTSIAIPD 69
>UniRef50_Q7T9T4 Cluster: Vp39-capsid; n=5; Granulovirus|Rep:
Vp39-capsid - Adoxophyes orana granulovirus (AoGV)
Length = 291
Score = 53.2 bits (122), Expect = 1e-06
Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Frame = -3
Query: 215 VGMAPRQMRVNRCIFASIVS----FDACITYKSPCSPDAYHD--DGWFICNSHLIKRFKM 54
+ + P ++ N CIF +V + C Y SPCSPDA + DG FICN HL K FK+
Sbjct: 4 INVGPCELN-NYCIFQGVVGMMPDYYRCENYSSPCSPDASNSNLDGTFICNYHLNKYFKI 62
Query: 53 SKMVLPIFDEDDNQ-FKM 3
K I DN+ FKM
Sbjct: 63 LKSSFRIPSGKDNKSFKM 80
>UniRef50_Q9DVV4 Cluster: PxORF79 peptide; n=1; Plutella xylostella
granulovirus|Rep: PxORF79 peptide - Plutella xylostella
granulovirus
Length = 320
Score = 50.4 bits (115), Expect = 7e-06
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = -3
Query: 209 MAPRQMRV-NRCIFASIVSFDA--CITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVL 39
M+ RQ RV N CIF ++ ++ C CS DA +DDG FICN HL F + KM L
Sbjct: 2 MSLRQNRVYNNCIFQAVSYSNSSLCADPVLHCSKDASNDDGTFICNHHLSMYFPLEKMTL 61
Query: 38 PIFDEDDNQFKM 3
I FK+
Sbjct: 62 EIPSGTGTSFKL 73
>UniRef50_Q6QXM6 Cluster: ORF086; n=1; Agrotis segetum
granulovirus|Rep: ORF086 - Agrotis segetum granulosis
virus (AsGV) (Agrotis segetumgranulovirus)
Length = 292
Score = 49.6 bits (113), Expect = 1e-05
Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -3
Query: 185 NRCIFASIV--SFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDEDDNQ 12
N CIF + F C Y+ PC Y+DDG FIC HL K FKM KMV+ I +
Sbjct: 12 NLCIFQGVQPPEFLNCRPYEPPCI-QPYNDDGTFICQYHLAKYFKMEKMVVRIGSGVGPE 70
Query: 11 FKM 3
F M
Sbjct: 71 FDM 73
>UniRef50_Q9PYT2 Cluster: ORF111; n=4; Granulovirus|Rep: ORF111 -
Xestia c-nigrum granulosis virus (XnGV) (Xestia
c-nigrumgranulovirus)
Length = 329
Score = 46.4 bits (105), Expect = 1e-04
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -3
Query: 185 NRCIFASIV--SFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVLPI 33
N CIF + F C Y PCS D + DG F+C+ HL + FK+ K V I
Sbjct: 16 NLCIFQGVQPPEFMNCGIYTPPCSDDCVNKDGTFVCSYHLARYFKLKKEVFEI 68
>UniRef50_Q8JRX1 Cluster: Capsid protein VP39; n=1; Phthorimaea
operculella granulovirus|Rep: Capsid protein VP39 -
Phthorimaea operculella granulovirus
Length = 293
Score = 45.2 bits (102), Expect = 3e-04
Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = -3
Query: 185 NRCIFASI-VSFDACITYKSPCSPDAYHD--DGWFICNSHLIKRFKM--SKMVLPIFDED 21
N CIF + FD C Y CS DA + DG FICN HL K F++ SK +P D
Sbjct: 13 NYCIFQGVNYQFD-CDGYTRQCSEDARYSQLDGTFICNFHLGKYFRILKSKFEIPSGGVD 71
Query: 20 DNQFKM 3
+ FKM
Sbjct: 72 NRSFKM 77
>UniRef50_Q8YXH3 Cluster: Zam protein; n=6; Cyanobacteria|Rep: Zam
protein - Anabaena sp. (strain PCC 7120)
Length = 783
Score = 32.3 bits (70), Expect = 2.1
Identities = 24/85 (28%), Positives = 43/85 (50%)
Frame = +1
Query: 4 ILN*LSSSSKMGKTIFDILKRLMRWLLQINHPSS*YASGEHGDLYVMHASNDTMDAKMQR 183
I+ L + + +G+ I + RL R LQ+N PS+ + G L + ++ + + +
Sbjct: 389 IIERLQNLTTIGQAIKE--SRLARGSLQLNLPSNQNPYYDEGSLGAVLVNDSPVRSLLME 446
Query: 184 LTLICRGAIPTGISAILLPL*IWTT 258
L L+ I T +SA+ +P IW T
Sbjct: 447 LVLLVNELIATHLSALGIPA-IWRT 470
>UniRef50_Q01W69 Cluster: Putative uncharacterized protein
precursor; n=1; Solibacter usitatus Ellin6076|Rep:
Putative uncharacterized protein precursor - Solibacter
usitatus (strain Ellin6076)
Length = 693
Score = 30.7 bits (66), Expect = 6.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 230 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 108
MAL+P PR+ R+ R + +VSF C P D Y
Sbjct: 217 MALLPEAGIPRRSRILRTLQVGLVSFALCAFQLLPIFADGY 257
>UniRef50_A4HF56 Cluster: Putative uncharacterized protein; n=1;
Leishmania braziliensis|Rep: Putative uncharacterized
protein - Leishmania braziliensis
Length = 4200
Score = 30.7 bits (66), Expect = 6.5
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 139 VMHASNDTMDAKMQRLTLICRGAIPTGISAILLPL*IWTTAIL*LR 276
V H+S DT D + +R L G+ +G+ LLP W+T++ LR
Sbjct: 1262 VPHSSPDTPDVRAERAPLTRNGSSTSGLFPALLPS-AWSTSLPPLR 1306
>UniRef50_UPI0000D55767 Cluster: PREDICTED: similar to CG9564-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG9564-PA - Tribolium castaneum
Length = 825
Score = 30.3 bits (65), Expect = 8.6
Identities = 11/33 (33%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
Frame = -3
Query: 275 LNHKIAVVHIYNGNNMAL--MPVGMAPRQMRVN 183
+++ I+V+H++N + +L +P+G+APR +V+
Sbjct: 680 MDYDISVLHLFNSIDFSLSALPIGLAPRNYKVS 712
>UniRef50_Q5GSI9 Cluster: Ankyrin repeat-containing protein and
possible domain WF-3; n=1; Wolbachia endosymbiont strain
TRS of Brugia malayi|Rep: Ankyrin repeat-containing
protein and possible domain WF-3 - Wolbachia sp. subsp.
Brugia malayi (strain TRS)
Length = 1108
Score = 30.3 bits (65), Expect = 8.6
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 16 LSSSSKMGKTIFDILKRLMRWLLQINHPSS 105
L SS G +IF ++KRL+ + QIN PSS
Sbjct: 1076 LPSSKIYGVSIFQVIKRLLGFNEQINKPSS 1105
>UniRef50_A0RRG8 Cluster: Putative uncharacterized protein; n=1;
Campylobacter fetus subsp. fetus 82-40|Rep: Putative
uncharacterized protein - Campylobacter fetus subsp.
fetus (strain 82-40)
Length = 451
Score = 30.3 bits (65), Expect = 8.6
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 185 NRCIFASIVSFDACITYKSPCSPDAYHD--DGWFICNSHLIKRFKMSKM 45
N C + + ++ ITYK+P S YH D ICN H+I + + +K+
Sbjct: 59 NICFNDAHMVYNGKITYKTPYS--FYHKKLDNKIICNKHMISKEESNKL 105
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 302,355,638
Number of Sequences: 1657284
Number of extensions: 5144020
Number of successful extensions: 12106
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12099
length of database: 575,637,011
effective HSP length: 73
effective length of database: 454,655,279
effective search space used: 10002416138
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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