Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e19
         (289 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    22   1.5  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    21   2.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   2.0  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   2.6  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    20   4.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   6.1  
AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    19   8.0  

>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 164 IVSFDACITYKSPCSPD 114
           ++++  C+  K PCSP+
Sbjct: 53  LLNYINCLLEKGPCSPE 69


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 146 CITYKSPCSPD 114
           C+  K PC+PD
Sbjct: 48  CLLEKKPCTPD 58


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
 Frame = -3

Query: 212 GMAPRQMRVNRCIFASIVSFDA----CITYKS-PCSPDAYHDDGWFICNSHL 72
           G+   Q  VNRC   S   FD     C T  S P  P      G  +  SHL
Sbjct: 5   GLGAIQPGVNRCKLLSCKDFDTLYRDCTTASSWPGRPPKRAPVGLSLAASHL 56


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 197 VAAPYPRALAPYCCRYKY 250
           VAA +PR   P  C+Y Y
Sbjct: 179 VAATHPRYADPDDCQYFY 196


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 155 FDACITYKSPCSP 117
           + AC+  K PC P
Sbjct: 43  YAACLLSKGPCPP 55


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 85   ATATSSNVLKCQKWFCPFSTK 23
            A  TS +++KC     PF +K
Sbjct: 1046 AVMTSDSIMKCAFCDTPFISK 1066


>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 208 IPTGISAILLPL*IW 252
           IP GI   L P+ +W
Sbjct: 64  IPDGIHTSLYPVLVW 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,203
Number of Sequences: 336
Number of extensions: 1268
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5003479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)