Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e19
         (289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   0.95 
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   2.2  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    25   2.9  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    24   3.8  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    24   5.0  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    24   5.0  
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         23   8.8  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    23   8.8  

>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = -3

Query: 221 MPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 108
           +P+G  P  +R N+C+ +     +     + P  P  Y
Sbjct: 155 VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGY 192


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 22  SSSKMGKTIFDILKRLMRWLLQINHPSS 105
           +S K+GK   +IL  L+R     NHP S
Sbjct: 528 NSGKLGKNYTNILCLLLRLRQACNHPQS 555


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 269 HKIAVVHIYNGNNMALMP 216
           HKI  VHIY+ +N+ L P
Sbjct: 23  HKIKEVHIYDFDNVRLNP 40


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 147 RVERHDGRENAAVNSHLSRRHTHGH*RH 230
           R   H   E     +H SRRH H H RH
Sbjct: 9   RTSTHKFNETDRETNH-SRRHRHHHSRH 35


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 99  VVMIRVGRTR*LVCYARVERHDGRENAAVNSHLSRRHTHGH*RHI 233
           +V++ V + + +  Y ++  +D  E   + S LSRR      +HI
Sbjct: 19  LVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHI 63


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 3   HFELIVVFVENGQNHF*HFKTFDEVAVADKPSVVMIRVGRTR 128
           HF L V  + N  N    ++ F E     K  VV  R G+TR
Sbjct: 29  HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTR 70


>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 75

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 209 YPRALAPYCCRYKYGPR 259
           Y  +LA YC   KYG R
Sbjct: 10  YGSSLADYCLNAKYGQR 26


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 15  IVVFVENGQNHF 50
           +VVFV N +NHF
Sbjct: 293 VVVFVVNAENHF 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,246
Number of Sequences: 5004
Number of extensions: 21354
Number of successful extensions: 52
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)