Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e19
         (289 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0156 - 15282111-15282752,15284787-15285719                       27   3.2  
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240...    26   4.2  
10_08_0964 + 21906737-21907993                                         26   5.6  
08_02_0199 - 14160881-14161054,14161151-14161306,14161802-141619...    26   5.6  
11_01_0067 + 539152-540063                                             25   9.8  
06_03_1176 - 28172230-28172547,28172691-28172849,28172962-28174194     25   9.8  
04_03_0094 - 11113279-11114469                                         25   9.8  
03_05_0371 + 23570246-23570359,23570499-23570575,23570600-235706...    25   9.8  
02_05_1160 + 34580680-34582659                                         25   9.8  
01_06_1816 + 40086972-40087820,40088324-40088459,40088544-400886...    25   9.8  

>10_08_0156 - 15282111-15282752,15284787-15285719
          Length = 524

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 284 DFFLNHKIAVVHIYNGNNMALMPVGMAPRQMR 189
           D FL+  I V+  + GN+MA  P G   RQ+R
Sbjct: 106 DRFLSTTIGVI-TFGGNDMAFAPYGERWRQLR 136


>07_03_1764 +
           29322683-29323387,29323809-29323889,29323968-29324072,
           29324453-29325382,29326728-29326856,29326953-29327042,
           29327237-29327293,29327362-29327394
          Length = 709

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 116 DAYHDDGWFICNSH 75
           D+YHDDG  +C+ H
Sbjct: 325 DSYHDDGASLCSKH 338


>10_08_0964 + 21906737-21907993
          Length = 418

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +1

Query: 124 HGDLYVMHASNDTM 165
           HG+L V+HA++DTM
Sbjct: 308 HGELCVLHANSDTM 321


>08_02_0199 -
           14160881-14161054,14161151-14161306,14161802-14161921,
           14162046-14162143,14162969-14163041,14164472-14164619,
           14165108-14165232,14165611-14165652,14165757-14166074,
           14166633-14167559,14167584-14167852,14167946-14168255,
           14169281-14169465,14170795-14170901,14171320-14171486
          Length = 1072

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 76  WLLQINHPSS*YA-SGEHGDLYVMHASNDTMD 168
           WL++ N     +A SGEH ++   H+  DT+D
Sbjct: 220 WLMEANFLEDQFAKSGEHQNIVKAHSVIDTVD 251


>11_01_0067 + 539152-540063
          Length = 303

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
 Frame = -3

Query: 125 CSPDAYHDDGW-FICNSH 75
           C P AY+D GW FI   H
Sbjct: 221 CHPRAYYDGGWVFIAFGH 238


>06_03_1176 - 28172230-28172547,28172691-28172849,28172962-28174194
          Length = 569

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 155 FDACITYKSPCSPDAYH 105
           F++C+ Y   CSP+  H
Sbjct: 218 FNSCLEYAGKCSPEVIH 234


>04_03_0094 - 11113279-11114469
          Length = 396

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +3

Query: 144 ARVERHDGRENAAVNSHLSRRHTHGH 221
           ARV  H G  NA V S LSRR  + H
Sbjct: 19  ARVLYHLGSVNATVTSALSRRWRNVH 44


>03_05_0371 +
           23570246-23570359,23570499-23570575,23570600-23570675,
           23570761-23570892,23570945-23571412,23571513-23571590,
           23571693-23571809
          Length = 353

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -3

Query: 110 YHDDGWFICNSHLIKRFKMSKMVLPIFDE 24
           Y +DG F CN+H+  +  +++ ++  ++E
Sbjct: 110 YGEDGRFRCNTHVTGKLVIAEYLVEAYNE 138


>02_05_1160 + 34580680-34582659
          Length = 659

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 112 RIMTTDGLSATATSSNVLKCQKWFC 38
           +I+   GL       N+L+ Q+W+C
Sbjct: 404 KILLPTGLIKLKVLDNILRAQQWYC 428


>01_06_1816 +
           40086972-40087820,40088324-40088459,40088544-40088640,
           40088742-40088842,40089149-40089312,40089407-40089595,
           40089904-40090025,40090200-40090242
          Length = 566

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -1

Query: 124 VRPTRIMTTDGLSATATSSNVLKCQKWFCPFSTKTTI 14
           V    + TTD   A A    V KC++ F P  T   I
Sbjct: 219 VSTAAVRTTDDKKAAAAGVGVGKCRRRFVPSVTSALI 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,356,425
Number of Sequences: 37544
Number of extensions: 149042
Number of successful extensions: 326
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)