Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e19
         (289 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16275-1|CAA34351.1|  621|Drosophila melanogaster lamin protein.       27   5.1  
X07278-1|CAA30259.1|  622|Drosophila melanogaster protein ( Dros...    27   5.1  
BT001506-1|AAN71261.1|  622|Drosophila melanogaster LD38055p pro...    27   5.1  
AE014134-935|AAF52262.1|  622|Drosophila melanogaster CG6944-PA ...    27   5.1  

>X16275-1|CAA34351.1|  621|Drosophila melanogaster lamin protein.
          Length = 621

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -1

Query: 139 HTSHRVRPTRIMTTDGLSATAT----SSNVLKCQKWFCPFSTKTTI 14
           H S R+ P  ++T       A+    SS V+K QKW    +T+T +
Sbjct: 517 HRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQKWVSADNTRTIL 562


>X07278-1|CAA30259.1|  622|Drosophila melanogaster protein (
           Drosophila mRNA fornuclear lamin Dm0. ).
          Length = 622

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -1

Query: 139 HTSHRVRPTRIMTTDGLSATAT----SSNVLKCQKWFCPFSTKTTI 14
           H S R+ P  ++T       A+    SS V+K QKW    +T+T +
Sbjct: 518 HRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQKWVSADNTRTIL 563


>BT001506-1|AAN71261.1|  622|Drosophila melanogaster LD38055p
           protein.
          Length = 622

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -1

Query: 139 HTSHRVRPTRIMTTDGLSATAT----SSNVLKCQKWFCPFSTKTTI 14
           H S R+ P  ++T       A+    SS V+K QKW    +T+T +
Sbjct: 518 HRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQKWVSADNTRTIL 563


>AE014134-935|AAF52262.1|  622|Drosophila melanogaster CG6944-PA
           protein.
          Length = 622

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -1

Query: 139 HTSHRVRPTRIMTTDGLSATAT----SSNVLKCQKWFCPFSTKTTI 14
           H S R+ P  ++T       A+    SS V+K QKW    +T+T +
Sbjct: 518 HRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQKWVSADNTRTIL 563


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,862,658
Number of Sequences: 53049
Number of extensions: 252048
Number of successful extensions: 544
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 24,988,368
effective HSP length: 72
effective length of database: 21,168,840
effective search space used: 486883320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)