Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e19
         (289 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical pr...    29   0.71 
Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical pr...    27   1.6  
Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    27   2.2  
U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical pr...    26   5.0  
U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical pr...    26   5.0  
U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical pr...    26   5.0  
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr...    26   5.0  
U39855-5|AAA81084.1|  118|Caenorhabditis elegans Hypothetical pr...    26   5.0  
U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    25   6.6  
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    25   8.7  

>Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical
           protein C32H11.4 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 215 VGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYH 105
           +GM P  + + + +FA+  S D    + SP  P+ Y+
Sbjct: 146 IGMQPHVLNITQDLFAADFSSDKVALFVSPADPNDYY 182


>Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical
           protein F01D5.3 protein.
          Length = 132

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -3

Query: 194 MRVNRCIFASIVSFDACITYKSPCSPDAYHD--DGWFICNSHLIKRF 60
           M +   I    VS  AC    +PC  D Y D  D   +CN+ + K F
Sbjct: 1   MLLQSSILLLSVSLAACQISTAPCQDDPYTDCRDYAALCNNPMYKNF 47


>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 73  SSNVLKCQKWFCP 35
           ++N+LK  KWFCP
Sbjct: 130 ATNILKLNKWFCP 142


>U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical
           protein F07C3.3 protein.
          Length = 791

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 189 SHLSRRHTHGH*RHIVAVINMDHGN 263
           +HLS+ H +G   + +++I  DHGN
Sbjct: 512 AHLSQMHLNGDLDNTLSIIMGDHGN 536


>U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical
           protein T14E8.1c protein.
          Length = 1018

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 119 PDAYHDDGWFICNSHLIKRFKMSKMV 42
           P AYH D  FI N+H +  F+    V
Sbjct: 194 PTAYHADSSFIHNNHALTGFEREGFV 219


>U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical
           protein T14E8.1b protein.
          Length = 1030

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 119 PDAYHDDGWFICNSHLIKRFKMSKMV 42
           P AYH D  FI N+H +  F+    V
Sbjct: 194 PTAYHADSSFIHNNHALTGFEREGFV 219


>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical
           protein T14E8.1a protein.
          Length = 1086

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 119 PDAYHDDGWFICNSHLIKRFKMSKMV 42
           P AYH D  FI N+H +  F+    V
Sbjct: 194 PTAYHADSSFIHNNHALTGFEREGFV 219


>U39855-5|AAA81084.1|  118|Caenorhabditis elegans Hypothetical
           protein F18G5.1 protein.
          Length = 118

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 212 PRALAPYCCRYKYGPRQFYD*ERN 283
           PR ++ Y  ++KYGP + Y  + N
Sbjct: 44  PRRISIYAPKFKYGPNRQYSDDEN 67


>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 141 NIQVTVFARRVS*RRMVYLQQPP 73
           N++ T+ +RR+  RR++ L +PP
Sbjct: 380 NVRSTIASRRMETRRLINLGEPP 402


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
 Frame = -3

Query: 239 GNNMALMPVGMAPRQMRVNRCIFASIVSFDAC-ITYKSPCSPDAYHDDGW----FICNS- 78
           GN+M +  V    R   V     AS+ + D C I +  P     Y    W    F C S 
Sbjct: 89  GNSMVIFVVNRFKRMRNVTNIFLASLSTADLCLIWFCVPIMFMKYMSHTWSMGRFACYSV 148

Query: 77  HLIKRF 60
           H I++F
Sbjct: 149 HYIQQF 154


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
 Frame = -3

Query: 239 GNNMALMPVGMAPRQMRVNRCIFASIVSFDAC-ITYKSPCSPDAYHDDGW----FICNS- 78
           GN+M +  V    R   V     AS+ + D C I +  P     Y    W    F C S 
Sbjct: 89  GNSMVIFVVNRFKRMRNVTNIFLASLSTADLCLIWFCVPIMFMKYMSHTWSMGRFACYSV 148

Query: 77  HLIKRF 60
           H I++F
Sbjct: 149 HYIQQF 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,068,910
Number of Sequences: 27780
Number of extensions: 128127
Number of successful extensions: 319
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)