Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e19
         (289 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   1.7  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   3.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   3.0  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   3.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   5.3  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    19   9.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   9.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    19   9.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           19   9.2  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +3

Query: 150 VERHDGRENAAVNSHLSRRHTHGH*RHIVAVINMDHGNFMIEK 278
           V R   R+N     HL   H H    H +    + H  F+ E+
Sbjct: 261 VRRDSRRKNYGGVYHLDNHHVHHANHHAI----LGHSGFLCER 299


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 261  CRGPYL*RQQYGANARGYGAATNE 190
            C    L  + YG NARG    T E
Sbjct: 1888 CDRDQLVNRNYGVNARGKDGMTTE 1911


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 146 CITYKSPCSPDA 111
           C+  + PC+PDA
Sbjct: 49  CLLDQGPCTPDA 60


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 124 VRPTRIMTTDGLSATATSSNVLKCQKWFCPFS 29
           VRP  +         AT+  + K  ++F PFS
Sbjct: 339 VRPATVQYDTCCQGRATAIYIDKVSRFFFPFS 370


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 146 CITYKSPCSPDA 111
           C+  + PC+PDA
Sbjct: 49  CLLDQGPCTPDA 60


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 118 PTRIMTTDGLSATATSSN 65
           PTR  TT   + TAT+++
Sbjct: 919 PTRYSTTKSSAVTATNAS 936


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -1

Query: 124 VRPTRIMTTDGLSATATSSNVLKCQKWFCPFSTK 23
           V   R   TDG  A    + V +   WF  ++ K
Sbjct: 411 VASDRFFITDGEKAARMQAKVNRQPVWFYYYTYK 444


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 274 SIIKLPWSIFITATIWR*CPW 212
           S++  P  +  +A +WR  PW
Sbjct: 538 SLLGGPLVMVCSAPVWRFQPW 558


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 99  RMVYLQQPPHQTF*NVKNGFAH 34
           R+ +L  P H  F ++++  AH
Sbjct: 194 RVTFLDTPGHAAFISMRHRGAH 215


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -1

Query: 124 VRPTRIMTTDGLSATATSSNVLKCQKWFCPFSTK 23
           V   R   TDG  A    + V +   WF  ++ K
Sbjct: 411 VASDRFFITDGEKAARMQAKVNRQPVWFYYYTYK 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,704
Number of Sequences: 438
Number of extensions: 1580
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)