Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e14
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   3.1  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    24   4.2  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    24   5.5  
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo...    23   7.3  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    23   9.6  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    23   9.6  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    23   9.6  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    23   9.6  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    23   9.6  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        23   9.6  

>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = -1

Query: 140 FLESSFFLC--TFAVQYSCMC 84
           F   SFFL   TFAV  SC+C
Sbjct: 103 FSPKSFFLVYLTFAVSVSCLC 123


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 270 SHYMSIWLIGLRKFIIKDGLKNTEY 196
           +H+  + +   RK++ KDG+  TEY
Sbjct: 227 THFGELAIALFRKYLAKDGIVITEY 251


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 147 GLFFGVVIFFVYICCAIFMYVFRSYEH 67
           G+    V F + +C A+  YVF    H
Sbjct: 424 GISILFVFFIILVCLAVIFYVFNIRIH 450


>SPCC338.10c |cox5||cytochrome c oxidase subunit
           V|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 174

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 222 KDGLKNTEYGRKKQSWLKIA 163
           KDGL    Y R+KQ W  ++
Sbjct: 51  KDGLITDLYARQKQPWTTLS 70


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 152  IMDYFLESSFFLCTFAVQYSC 90
            +M YF+E   + C  A+ Y+C
Sbjct: 1548 LMKYFVEIGNYECFAAILYTC 1568


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 167 IFNQLCFFLPYSVF 208
           I  Q+CFFLP SV+
Sbjct: 280 IHAQICFFLPKSVW 293


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 79  SKHIHEYCTANVHKKNDD 132
           S+H H + T N H K DD
Sbjct: 163 SRH-HRHSTTNYHSKRDD 179


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 289 CCEDRLVALYVDLVDRLKKVHH 224
           CCE RL+    D     + VHH
Sbjct: 47  CCEIRLITSKCDFESTQQLVHH 68


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 280 DRLVALYVDLVDRLKKVHH*RR 215
           D  VAL +DL+D+L ++H  +R
Sbjct: 370 DYQVALAIDLLDKLLELHPSKR 391


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 171 KIANLCYHGLFFGVVIFFVYIC 106
           K+A   Y G  F + IFF+ IC
Sbjct: 149 KLAKYVYEGNQFFLFIFFLSIC 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,265,602
Number of Sequences: 5004
Number of extensions: 24584
Number of successful extensions: 57
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)