Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e14
         (299 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022267-1|AAH22267.1|  515|Homo sapiens male sterility domain c...    36   0.018
AK027756-1|BAB55347.1|  515|Homo sapiens protein ( Homo sapiens ...    36   0.018
AK001927-1|BAA91983.1|  515|Homo sapiens protein ( Homo sapiens ...    36   0.018
AK001324-1|BAA91625.1|  515|Homo sapiens protein ( Homo sapiens ...    36   0.018
BC017377-1|AAH17377.1|  515|Homo sapiens male sterility domain c...    31   0.50 
AY600449-1|AAT42129.1|  515|Homo sapiens fatty acyl CoA reductas...    31   0.50 
AY423606-1|AAR84086.1|  515|Homo sapiens putative fatty acyl red...    31   0.50 
AY358784-1|AAQ89144.1|  515|Homo sapiens VSIP2423 protein.             31   0.50 

>BC022267-1|AAH22267.1|  515|Homo sapiens male sterility domain
           containing 1 protein.
          Length = 515

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 15/61 (24%), Positives = 35/61 (57%)
 Frame = -3

Query: 297 NFDVAKIDWSHYMSIWLIGLRKFIIKDGLKNTEYGRKKQSWLKIANLCYHGLFFGVVIFF 118
           NFDV +++W  Y+  +++G++K+++K+ +      + KQ   ++ N+ Y    F   +F 
Sbjct: 422 NFDVRQLNWLEYIENYVLGVKKYLLKEDMAGIP--KAKQRLKRLRNIHY---LFNTALFL 476

Query: 117 V 115
           +
Sbjct: 477 I 477


>AK027756-1|BAB55347.1|  515|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14850 fis, clone PLACE1000636, weakly similar to
           MALE STERILITY PROTEIN 2. ).
          Length = 515

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 15/61 (24%), Positives = 35/61 (57%)
 Frame = -3

Query: 297 NFDVAKIDWSHYMSIWLIGLRKFIIKDGLKNTEYGRKKQSWLKIANLCYHGLFFGVVIFF 118
           NFDV +++W  Y+  +++G++K+++K+ +      + KQ   ++ N+ Y    F   +F 
Sbjct: 422 NFDVRQLNWLEYIENYVLGVKKYLLKEDMAGIP--KAKQRLKRLRNIHY---LFNTALFL 476

Query: 117 V 115
           +
Sbjct: 477 I 477


>AK001927-1|BAA91983.1|  515|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11065 fis, clone PLACE1004868, weakly similar to
           MALE STERILITY PROTEIN 2. ).
          Length = 515

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 15/61 (24%), Positives = 35/61 (57%)
 Frame = -3

Query: 297 NFDVAKIDWSHYMSIWLIGLRKFIIKDGLKNTEYGRKKQSWLKIANLCYHGLFFGVVIFF 118
           NFDV +++W  Y+  +++G++K+++K+ +      + KQ   ++ N+ Y    F   +F 
Sbjct: 422 NFDVRQLNWLEYIENYVLGVKKYLLKEDMAGIP--KAKQRLKRLRNIHY---LFNTALFL 476

Query: 117 V 115
           +
Sbjct: 477 I 477


>AK001324-1|BAA91625.1|  515|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10462 fis, clone NT2RP1001494, weakly similar to
           MALE STERILITY PROTEIN 2. ).
          Length = 515

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 15/61 (24%), Positives = 35/61 (57%)
 Frame = -3

Query: 297 NFDVAKIDWSHYMSIWLIGLRKFIIKDGLKNTEYGRKKQSWLKIANLCYHGLFFGVVIFF 118
           NFDV +++W  Y+  +++G++K+++K+ +      + KQ   ++ N+ Y    F   +F 
Sbjct: 422 NFDVRQLNWLEYIENYVLGVKKYLLKEDMAGIP--KAKQRLKRLRNIHY---LFNTALFL 476

Query: 117 V 115
           +
Sbjct: 477 I 477


>BC017377-1|AAH17377.1|  515|Homo sapiens male sterility domain
           containing 2 protein.
          Length = 515

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -3

Query: 297 NFDVAKIDWSHYMSIWLIGLRKFIIKDGLKNTEYGRKKQSWLKIANLCY 151
           N DV ++ W+ Y+  + +G +K+++ + +      RK  +  K+ N+ Y
Sbjct: 422 NIDVRQLHWAEYIENYCLGTKKYVLNEEMSGLPAARKHLN--KLRNIRY 468


>AY600449-1|AAT42129.1|  515|Homo sapiens fatty acyl CoA reductase 1
           protein.
          Length = 515

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -3

Query: 297 NFDVAKIDWSHYMSIWLIGLRKFIIKDGLKNTEYGRKKQSWLKIANLCY 151
           N DV ++ W+ Y+  + +G +K+++ + +      RK  +  K+ N+ Y
Sbjct: 422 NIDVRQLHWAEYIENYCLGTKKYVLNEEMSGLPAARKHLN--KLRNIRY 468


>AY423606-1|AAR84086.1|  515|Homo sapiens putative fatty acyl
           reductase protein.
          Length = 515

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -3

Query: 297 NFDVAKIDWSHYMSIWLIGLRKFIIKDGLKNTEYGRKKQSWLKIANLCY 151
           N DV ++ W+ Y+  + +G +K+++ + +      RK  +  K+ N+ Y
Sbjct: 422 NIDVRQLHWAEYIENYCLGTKKYVLNEEMSGLPAARKHLN--KLRNIRY 468


>AY358784-1|AAQ89144.1|  515|Homo sapiens VSIP2423 protein.
          Length = 515

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -3

Query: 297 NFDVAKIDWSHYMSIWLIGLRKFIIKDGLKNTEYGRKKQSWLKIANLCY 151
           N DV ++ W+ Y+  + +G +K+++ + +      RK  +  K+ N+ Y
Sbjct: 422 NIDVRQLHWAEYIENYCLGTKKYVLNEEMSGLPAARKHLN--KLRNIRY 468


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,511,469
Number of Sequences: 237096
Number of extensions: 738365
Number of successful extensions: 998
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 76,859,062
effective HSP length: 76
effective length of database: 58,839,766
effective search space used: 1353314618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)