Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e14
         (299 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...    42   6e-05
Z73905-4|CAI91175.1|  536|Caenorhabditis elegans Hypothetical pr...    29   0.62 
AF498370-1|AAN65376.1|  550|Caenorhabditis elegans GABA-A recept...    29   0.62 
AF036689-1|AAB88320.1|  186|Caenorhabditis elegans Hypothetical ...    27   2.5  
AF068710-2|AAC17770.1|  476|Caenorhabditis elegans Hypothetical ...    27   3.3  
U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine rec...    26   4.4  
AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical...    26   4.4  
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ...    26   4.4  
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ...    26   4.4  
AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical...    26   4.4  
Z81116-5|CAB03298.1|  414|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z72511-4|CAA96660.1|  395|Caenorhabditis elegans Hypothetical pr...    26   5.8  
U23521-2|AAC46815.2|  316|Caenorhabditis elegans Hypothetical pr...    26   5.8  
U23521-1|ABD63220.1|  348|Caenorhabditis elegans Hypothetical pr...    26   5.8  
AY204186-1|AAO39190.1|  421|Caenorhabditis elegans nuclear recep...    26   5.8  
AF038606-9|AAB92027.1|  152|Caenorhabditis elegans Hypothetical ...    26   5.8  
Z83238-1|CAB05792.1|  339|Caenorhabditis elegans Hypothetical pr...    25   7.6  
U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine rece...    25   7.6  
AF016664-9|AAB66065.2|  320|Caenorhabditis elegans Serpentine re...    25   7.6  

>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 14/36 (38%), Positives = 27/36 (75%)
 Frame = -3

Query: 297 NFDVAKIDWSHYMSIWLIGLRKFIIKDGLKNTEYGR 190
           NFDV ++DW+ Y+  +++G++KF++K+ L+N    R
Sbjct: 423 NFDVRQVDWNSYLFDYVMGIKKFLLKENLENLNRSR 458


>Z73905-4|CAI91175.1|  536|Caenorhabditis elegans Hypothetical
           protein C32C4.7 protein.
          Length = 536

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 167 IFNQLCFFLPYSVFLRPSLMMNFLKPINQIDI 262
           + N +C F+ Y VF++P  M+++  P  +ID+
Sbjct: 209 LMNTVCAFI-YQVFMKPPKMISYSHPYYEIDL 239


>AF498370-1|AAN65376.1|  550|Caenorhabditis elegans GABA-A receptor
           subunit protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = -2

Query: 283 EDRLVALYVDLVDRLKKVHH*RRPQEHRIW*EETELVEDS*FMLSWTIFWSRH 125
           ED +V+       RL  V   RR   + I+  ET L  D   MLSW  FW  H
Sbjct: 237 EDSIVSTATGSYQRLSLVFQLRRSVGYFIF--ETYLPCDLIVMLSWVSFWINH 287


>AF036689-1|AAB88320.1|  186|Caenorhabditis elegans Hypothetical
           protein C50A2.3 protein.
          Length = 186

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 129 VIFFVYICCAIFMYVFRSYEHAV 61
           +IF V++C  +   V RSYE  V
Sbjct: 35  IIFIVFLCLCVVCLVVRSYERPV 57


>AF068710-2|AAC17770.1|  476|Caenorhabditis elegans Hypothetical
           protein T06A1.5 protein.
          Length = 476

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 198 YGRKKQSWLKIANLCYHGLFFGVVIFFVYI 109
           YG K+  WL  A L  H    GV  FF+YI
Sbjct: 220 YG-KEPKWLHFAELVEHYKLQGVNKFFIYI 248


>U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine
           receptor, class w protein71 protein.
          Length = 353

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 164 LIYVIMDYFLESSFFLCTFAVQYSCMCFDHMSMQYRLI 51
           L YVI    +  SFF C  A  +S +CF  +S +YR +
Sbjct: 293 LNYVIGYGSVFISFFYCIVATSHSVICF-ALSSEYRQV 329


>AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical
           protein Y105C5B.23 protein.
          Length = 338

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 162 NLCYHGLFFGVVIFFVYICCAIFMYVFRSYEHAV 61
           N+CYH L   ++   +++    F  + R++E A+
Sbjct: 21  NICYHFLVTSLLCLVLFVNVITFFTIARNFEEAL 54


>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5b protein.
          Length = 1136

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 148 WTIFWSRHFFCVHLL 104
           WT F S +FFC+ LL
Sbjct: 367 WTFFTSLYFFCISLL 381


>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5a protein.
          Length = 1088

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 148 WTIFWSRHFFCVHLL 104
           WT F S +FFC+ LL
Sbjct: 367 WTFFTSLYFFCISLL 381


>AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical
           protein Y102A5C.21 protein.
          Length = 355

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 132 VVIFFVYICCAIFMYVF 82
           V+IFFV + CA F Y++
Sbjct: 112 VIIFFVAMLCATFSYIY 128


>Z81116-5|CAB03298.1|  414|Caenorhabditis elegans Hypothetical
           protein T06C12.6 protein.
          Length = 414

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 171 KIANLCYHGLFFGVVIFFVYICCAIF 94
           K+  LC HGL FGV+      C A F
Sbjct: 25  KVCGLCAHGLHFGVLA--CRACAAFF 48


>Z72511-4|CAA96660.1|  395|Caenorhabditis elegans Hypothetical
           protein F55A11.7 protein.
          Length = 395

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +2

Query: 56  VYTACSYDRNTYM--NIAQ--QMYTKKMTTPKNSP 148
           V+T C+ D   +   N  Q  QMY  +  TP+ SP
Sbjct: 98  VHTTCAIDNEAFFGTNCTQCHQMYRPEQATPRQSP 132


>U23521-2|AAC46815.2|  316|Caenorhabditis elegans Hypothetical
           protein F41C3.8a protein.
          Length = 316

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
 Frame = -3

Query: 294 FDVAKIDWSHYMSIWLIGLRKFI-IKDGLKNTEYGRKKQSWLKIANLCYHGLFFGVVIFF 118
           F +A I W     +W+ G + F+   +G+    Y      W           FF    F 
Sbjct: 236 FALANIVWLILGCVWVYGSKAFVHFNEGMFERHYCDPTIYW---------SAFFACTAFL 286

Query: 117 VYICCAIFMYV 85
           ++ C  IF+ +
Sbjct: 287 IFYCVIIFLVI 297


>U23521-1|ABD63220.1|  348|Caenorhabditis elegans Hypothetical
           protein F41C3.8b protein.
          Length = 348

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
 Frame = -3

Query: 294 FDVAKIDWSHYMSIWLIGLRKFI-IKDGLKNTEYGRKKQSWLKIANLCYHGLFFGVVIFF 118
           F +A I W     +W+ G + F+   +G+    Y      W           FF    F 
Sbjct: 268 FALANIVWLILGCVWVYGSKAFVHFNEGMFERHYCDPTIYW---------SAFFACTAFL 318

Query: 117 VYICCAIFMYV 85
           ++ C  IF+ +
Sbjct: 319 IFYCVIIFLVI 329


>AY204186-1|AAO39190.1|  421|Caenorhabditis elegans nuclear receptor
           NHR-102 protein.
          Length = 421

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 171 KIANLCYHGLFFGVVIFFVYICCAIF 94
           K+  LC HGL FGV+      C A F
Sbjct: 32  KVCGLCAHGLHFGVLA--CRACAAFF 55


>AF038606-9|AAB92027.1|  152|Caenorhabditis elegans Hypothetical
           protein C04C3.7 protein.
          Length = 152

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 147 GLFFGVVIFFVYICCAIFMYVFRSYEHAV 61
           G+F G+  F+  +   I MYV   Y  A+
Sbjct: 116 GIFLGIFSFYPALGAFILMYVVTDYRRAI 144


>Z83238-1|CAB05792.1|  339|Caenorhabditis elegans Hypothetical
           protein T08G3.1 protein.
          Length = 339

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 147 GLFFGVVIFFVYICCAIFMYVFRSYEHAV*TYLK 46
           G+F G+   +  +   I MYV   Y  A+   LK
Sbjct: 287 GIFMGIFALYPALDAVILMYVITDYRRALIDVLK 320


>U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine
           receptor, class sx protein15 protein.
          Length = 332

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 163 SYLQPALFLPTIFGVLEAVF 222
           +YL    FLP I+GV+  +F
Sbjct: 128 TYLSILFFLPVIYGVISVIF 147


>AF016664-9|AAB66065.2|  320|Caenorhabditis elegans Serpentine
           receptor, class i protein71 protein.
          Length = 320

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 161 IYVIMDYFLESSFFLCTFAVQYSCMCFDHMSM 66
           I+++ D  L   +FLC FA    C    ++S+
Sbjct: 126 IHLVHDVLLYFCYFLCIFAPVVLCASMQYLSL 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,019,309
Number of Sequences: 27780
Number of extensions: 140501
Number of successful extensions: 409
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)