Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e14
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.20 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   1.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   3.3  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   3.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   7.6  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.0 bits (52), Expect = 0.20
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 289 CCEDRLVALYVDLVDR 242
           CC+ R  A+Y+D V R
Sbjct: 349 CCQGRATAIYIDKVSR 364


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 157 MLSWTIFWSRH 125
           MLSW  FW  H
Sbjct: 257 MLSWVSFWINH 267


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 12/45 (26%), Positives = 16/45 (35%)
 Frame = -2

Query: 160 FMLSWTIFWSRHFFCVHLLCNIHVCVSII*ACSIDLFKVHHVKYS 26
           + L W  + S      H L      V +  AC+    K H V  S
Sbjct: 11  YCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLS 55


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 204 TEYGRKKQSWLKIANLCYHGLFFGV 130
           T + R + +WLK     YH  FF V
Sbjct: 47  TGFPRPEITWLKDGIELYHHKFFQV 71


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 129 RLQKIVHDNIN 161
           R+QKIV+D+ N
Sbjct: 382 RMQKIVNDDFN 392


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,691
Number of Sequences: 438
Number of extensions: 1582
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)