Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e13
         (270 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4VET4 Cluster: Putative uncharacterized protein; n=1; ...    33   1.6  
UniRef50_A0BYD9 Cluster: Chromosome undetermined scaffold_137, w...    32   2.2  
UniRef50_UPI0000F2CCD5 Cluster: PREDICTED: hypothetical protein;...    31   5.0  
UniRef50_A5FKR2 Cluster: Putative uncharacterized protein precur...    31   5.0  
UniRef50_A2TYM1 Cluster: Putative uncharacterized protein; n=1; ...    31   5.0  
UniRef50_Q8D3H5 Cluster: Yb1688 protein; n=1; Wigglesworthia glo...    31   6.6  
UniRef50_Q23CY3 Cluster: Putative uncharacterized protein; n=1; ...    31   6.6  
UniRef50_Q1V1X8 Cluster: Putative uncharacterized protein; n=2; ...    30   8.8  
UniRef50_Q54N69 Cluster: Putative uncharacterized protein; n=1; ...    30   8.8  
UniRef50_Q4X394 Cluster: Putative uncharacterized protein; n=1; ...    30   8.8  

>UniRef50_A4VET4 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 207

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 18  VVIFSLYLGFF-FVYIFFQICAFFHWNQCPVSCKS*IINYYRTCKHIFCKILVFMRHCFL 194
           + +F+ ++ F  F+Y  FQ+  FF      +  K+ +IN+   C + F + L++  H FL
Sbjct: 132 ICLFNEFVSFISFLYFSFQV--FFSLLTSHIDSKNLLINFSYFCVNFFSEFLLYFPHFFL 189


>UniRef50_A0BYD9 Cluster: Chromosome undetermined scaffold_137,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_137,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 607

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 24  IFSLYLGFFFVYIFFQICAFFHWNQCPVSCKS*IINYYRTCKHIF 158
           IF+  +   F+Y +FQI ++F ++      K  +INY     H+F
Sbjct: 543 IFTYVINLLFLYGYFQILSYFGFDSMLAFYKQVVINYNNVGVHLF 587


>UniRef50_UPI0000F2CCD5 Cluster: PREDICTED: hypothetical protein;
           n=3; Amniota|Rep: PREDICTED: hypothetical protein -
           Monodelphis domestica
          Length = 350

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +2

Query: 20  CYFFTIFRIFFCLYFLPDMCFFSLESMPGFM*ILNN*LLSHLQAYILQNLSFYETLFFVL 199
           CY  ++  +FFCL FL   C+FSL      + I           +++ +   +  L+F  
Sbjct: 221 CYVLSVTSLFFCL-FLITFCYFSLYMKTRQLGIWKGMTSRASVTFLMHHTVLF--LYFCP 277

Query: 200 ILSVIFETFIF 232
           +L+ + ET ++
Sbjct: 278 LLAYVVETLLY 288


>UniRef50_A5FKR2 Cluster: Putative uncharacterized protein
           precursor; n=1; Flavobacterium johnsoniae UW101|Rep:
           Putative uncharacterized protein precursor -
           Flavobacterium johnsoniae UW101
          Length = 285

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = -2

Query: 194 QKTVSHKN*-DFAEYMLASAIIINYSRFT*NRALIPMKKSTYLEENINKKK 45
           +K+ +H+N  D  EY++ + II+  +    N+A+I   +  Y+ +N++K K
Sbjct: 133 KKSTNHQNLVDDIEYLVENGIIVRRTSRDRNKAIIGKLEYVYVNDNVSKHK 183


>UniRef50_A2TYM1 Cluster: Putative uncharacterized protein; n=1;
           Polaribacter dokdonensis MED152|Rep: Putative
           uncharacterized protein - Polaribacter dokdonensis
           MED152
          Length = 213

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = +2

Query: 26  FFTIFRIFFCLYFLPDMCFFSLESMPGFM*ILNN*LLSHLQAYILQNLSFYETLFFVL-I 202
           FFT+F + FC +FL  +  F+L  +  F+      L + +  +++   ++  ++ F+L I
Sbjct: 97  FFTLFLVVFCFFFLKKLLEFALTRL--FL------LKNQISVFLITKANYLYSISFILYI 148

Query: 203 LSVIFE 220
           L +++E
Sbjct: 149 LLILYE 154


>UniRef50_Q8D3H5 Cluster: Yb1688 protein; n=1; Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis|Rep:
           Yb1688 protein - Wigglesworthia glossinidia brevipalpis
          Length = 356

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 134 LSHLQAYILQNLSFYETLFFVLILSVIFETFIF 232
           ++H+   IL NL+    LFF  +L+V+F  F++
Sbjct: 147 ITHITKIILSNLTLIWNLFFNCLLTVLFSIFLY 179


>UniRef50_Q23CY3 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 905

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -1

Query: 120 KIYMKPGIDSNEKKHISGRKYKQKKILNIVKK*QRMV 10
           K Y       + KK I G +YKQK+I++ +KK Q++V
Sbjct: 356 KKYSNQNCQLSMKKDIVGIQYKQKEIMDNIKKGQQLV 392


>UniRef50_Q1V1X8 Cluster: Putative uncharacterized protein; n=2;
           Candidatus Pelagibacter ubique|Rep: Putative
           uncharacterized protein - Candidatus Pelagibacter ubique
           HTCC1002
          Length = 333

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +3

Query: 18  VVIFSLYLGFFFVYIFFQICAFFHWNQCPVSCKS*IINYYRTCK--HIFCKILVFMRHCF 191
           V+   LY+  FF Y+ F    +FH      S     I YY   K  + + K   F+   F
Sbjct: 49  VIFLLLYISIFFQYLIFDELNYFHSKLVVASLLIFFIGYYDDLKDNNPYLKTFFFISVIF 108

Query: 192 LY*F 203
           ++ F
Sbjct: 109 IFLF 112


>UniRef50_Q54N69 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 777

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -1

Query: 165 FCRIYACKCDNN*LFKIYMKPGIDSNEKKHISGRKYKQKKILNIVKK*QRMVNK 4
           FC+IY  K      F     PG +SN   + +   Y   K  N +KK +  +NK
Sbjct: 4   FCKIYKKKPIEKNTFIPLNNPGFNSNNNNNSNNNNYNINKNRNKIKKKKFFLNK 57


>UniRef50_Q4X394 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 32

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 11  TIRCYFFTIFRIFFCLYFLPDMCFFSLESM 100
           TIR Y +  FR+ FC YFL     FS  SM
Sbjct: 4   TIRMYVWIFFRLIFCFYFLKGY-HFSTYSM 32


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,497,369
Number of Sequences: 1657284
Number of extensions: 4146261
Number of successful extensions: 12419
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12251
length of database: 575,637,011
effective HSP length: 67
effective length of database: 464,598,983
effective search space used: 10221177626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)