Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e13
         (270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    28   0.26 
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   0.35 
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   1.4  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   2.5  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   2.5  
SPAC589.11 |mug82||translation release factor |Schizosaccharomyc...    25   2.5  
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   2.5  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    24   3.2  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   3.2  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    24   4.3  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    23   5.7  
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        23   5.7  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    23   5.7  
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    23   7.5  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 0.26
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 23  YFFTIFRIFFCLYFLPDMCFFSLESM 100
           YFF +F   F  Y+ PD+ F +L S+
Sbjct: 273 YFFIVFVASFIWYWFPDLIFPALSSL 298


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.5 bits (58), Expect = 0.35
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 104 GFM*ILNN*LLSHLQAYILQNLSFYETLFFVLILSVIFETFIFKICKIKQCH 259
           G + +L   L+++L +  L+N  F   L + L +SV+F    F  CK    H
Sbjct: 170 GVIYVLTIALINYLISKSLKNSIFNPLLTWTLDISVVFFKEYFAYCKFSSLH 221


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +2

Query: 131 LLSHLQAYILQNLSFYETLFFVLILSVIFETFI 229
           LL   ++Y+++ L   +++FF+  +  +FE F+
Sbjct: 569 LLIWFESYLVEELDNSKSIFFLFKIYKVFEVFV 601


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 30  SLYLGFFFVYIFFQICAFFHWNQCPV 107
           S  L  F+   F  +C FFH  QC +
Sbjct: 335 SWVLASFYSLHFLWLCTFFHALQCAI 360


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 33  LYLGFFFVYIFFQICAFFH 89
           L+L  F  YIFF + +FF+
Sbjct: 209 LFLVIFICYIFFTVLSFFN 227


>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -1

Query: 96  DSNEKKHISGRKYKQKK 46
           +SNEK+ +S +KYKQKK
Sbjct: 158 ESNEKR-LSEKKYKQKK 173


>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 96

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 5  LLTIRCYFFTIFRI-FFCLYFL 67
          +LTIRC F  +F I +FC + L
Sbjct: 6  VLTIRCTFHVLFAICYFCDHLL 27


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 131 LLSHLQAYILQNLSFYETLFFVLILSVIFETFIFKICKIKQC 256
           +LS ++ + L    +Y+  FF+LI S + E  I  + ++  C
Sbjct: 164 ILSQIREF-LSTADYYQRPFFLLIKSTLDEWTIAPLKELSHC 204


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 24  IFSLYLGFFFVYIFFQICAFFH 89
           I + +  FFF + FF  C  FH
Sbjct: 71  IEAFFYWFFFFFFFFSHCRRFH 92


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 8   LTIRCYFFTIFRIFFCLYFLPDMCF 82
           LT+  +F      FFCL F P + F
Sbjct: 274 LTVERFFQHFLARFFCLIFFPFLFF 298


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 20  CYFFTIFRIFFCLYFLPDMCFFSLESMP 103
           C+ ++I+    CL   P + + SL S P
Sbjct: 215 CFLWSIYICLLCLDLAPALFYDSLASAP 242


>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 8   LTIRCYFFTIFRIFFCLYFLPD 73
           L I   FF +F  FF L F PD
Sbjct: 70  LLIVFLFFNLFPTFFFLPFFPD 91


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 47  FFCLYFLPDMC 79
           FFCLYF   MC
Sbjct: 115 FFCLYFARGMC 125


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 5   LLTIRCYFFTIFRIFFCLYFLPDMCF 82
           L+T  C   TIF +  C YF P + +
Sbjct: 234 LITDAC--MTIFALGLCCYFYPSLVY 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,117,006
Number of Sequences: 5004
Number of extensions: 20074
Number of successful extensions: 48
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)