Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e13
         (270 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0071 + 26177698-26177796,26178449-26178553,26178636-261787...    27   2.1  
05_05_0079 + 22239238-22239395,22240837-22240877,22240955-222410...    25   6.3  
05_03_0372 + 13181649-13182321,13183149-13183213                       25   6.3  
04_03_0620 - 18088287-18088495,18089174-18089210,18089315-180893...    25   6.3  
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515...    25   6.3  
06_01_0721 - 5255422-5255790,5256287-5256660,5256845-5257192,525...    25   8.3  
04_04_1109 + 30965143-30965312,30965406-30965586,30965669-309661...    25   8.3  

>01_06_0071 +
           26177698-26177796,26178449-26178553,26178636-26178742,
           26179466-26179620,26180140-26180228,26180353-26180875,
           26181568-26181642,26181802-26182022,26182657-26182739,
           26182826-26182937,26183206-26183280,26183346-26183525
          Length = 607

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -1

Query: 255 HCFILQILNMNVSNMTLKISTKNSVS*KLRFCRIYACKCDNN 130
           H + LQ L+ N   +  KIS KNS+  K R   I A  CD N
Sbjct: 261 HVWHLQTLSQN-EVLPTKISVKNSLDKKGRIPIISAKLCDTN 301


>05_05_0079 +
           22239238-22239395,22240837-22240877,22240955-22241033,
           22241570-22241656,22241749-22241837,22241933-22242004,
           22242094-22242186,22242339-22242427
          Length = 235

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 164 NLSFYETLFFVLILSVIFETFIFK 235
           NL +Y T +F+LI+ ++   FI+K
Sbjct: 50  NLYYYRTNYFILIMFILGIGFIWK 73


>05_03_0372 + 13181649-13182321,13183149-13183213
          Length = 245

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 75  CAFFHWNQCPVSCK 116
           C  +HW++CPV+ K
Sbjct: 206 CMHWHWDKCPVAWK 219


>04_03_0620 -
           18088287-18088495,18089174-18089210,18089315-18089395,
           18089771-18089838,18093361-18094219
          Length = 417

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -1

Query: 201 ISTKNSVS*KLRFCRIYACKCDNN*LFKIYMKPGIDSNEKKHISGRKYKQ 52
           I T N+     +   +YACK D +  F     PG   N      G  Y+Q
Sbjct: 233 IRTVNNCDEAQKNLTLYACKSDKSECFNSSNGPGYICNCTNGYQGNPYRQ 282


>02_01_0690 -
           5152224-5152386,5152490-5152687,5152815-5153014,
           5153122-5153223,5153414-5153550,5153688-5153798,
           5156092-5156344,5157954-5158052,5158449-5158739
          Length = 517

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 48  FFVYIFFQICAFF 86
           FF+Y+FFQ  AFF
Sbjct: 491 FFIYLFFQGAAFF 503


>06_01_0721 -
           5255422-5255790,5256287-5256660,5256845-5257192,
           5257369-5257497,5257585-5257658,5257745-5257816,
           5257901-5257969,5258059-5258130,5258208-5258279,
           5258512-5258583,5258735-5258806,5258887-5258958,
           5259050-5259121,5259203-5259274,5259427-5259498,
           5259599-5259670,5259764-5259832,5260072-5260143,
           5260428-5260499,5260579-5260650,5260919-5260990,
           5261015-5261161,5261249-5261378,5262212-5262290
          Length = 931

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 255 HCFILQILNMNVSNMTLKISTKNSVS 178
           +CF L ILN++ +N+   + T N+ S
Sbjct: 470 NCFSLNILNVSYNNLAGVVPTDNNFS 495


>04_04_1109 +
           30965143-30965312,30965406-30965586,30965669-30966100,
           30966176-30966277,30966376-30966681,30966755-30966817,
           30967758-30967856
          Length = 450

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 78  AFFHWNQCPVSCKS*IINYY 137
           A FHW+QCP   +  +++ +
Sbjct: 97  AVFHWHQCPSDIRDTVLDEF 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,937,058
Number of Sequences: 37544
Number of extensions: 93274
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)