Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e13
         (270 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens ...    28   4.6  
BC115006-1|AAI15007.1| 1437|Homo sapiens Wolf-Hirschhorn syndrom...    28   6.1  
BC113469-1|AAI13470.1| 1437|Homo sapiens Wolf-Hirschhorn syndrom...    28   6.1  
BC101717-1|AAI01718.1| 1437|Homo sapiens WHSC1L1 protein, isofor...    28   6.1  
AJ295991-1|CAC28351.1| 1388|Homo sapiens Putative Chromatin modu...    28   6.1  
AJ295990-1|CAC28350.1| 1437|Homo sapiens putative chromatin modu...    28   6.1  
AF332469-1|AAK00355.1| 1437|Homo sapiens putative protein WHSC1L...    28   6.1  

>AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42815 fis, clone BRCAN2014143. ).
          Length = 189

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 15  FVVIFSLYLGFFFVYIFFQICAFFH 89
           ++ IF  Y+  F++YI+  I  +FH
Sbjct: 157 YICIFMFYVYVFYMYIYLHILHYFH 181


>BC115006-1|AAI15007.1| 1437|Homo sapiens Wolf-Hirschhorn syndrome
            candidate 1-like 1 protein.
          Length = 1437

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 90   WNQCPVSCKS*IINYYRTCKHIFCK 164
            W+QC   C S  +++   C H FCK
Sbjct: 1364 WHQCD-ECSSAAVSFCEFCPHSFCK 1387


>BC113469-1|AAI13470.1| 1437|Homo sapiens Wolf-Hirschhorn syndrome
            candidate 1-like 1 protein.
          Length = 1437

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 90   WNQCPVSCKS*IINYYRTCKHIFCK 164
            W+QC   C S  +++   C H FCK
Sbjct: 1364 WHQCD-ECSSAAVSFCEFCPHSFCK 1387


>BC101717-1|AAI01718.1| 1437|Homo sapiens WHSC1L1 protein, isoform
            long protein.
          Length = 1437

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 90   WNQCPVSCKS*IINYYRTCKHIFCK 164
            W+QC   C S  +++   C H FCK
Sbjct: 1364 WHQCD-ECSSAAVSFCEFCPHSFCK 1387


>AJ295991-1|CAC28351.1| 1388|Homo sapiens Putative Chromatin modulator
            protein.
          Length = 1388

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 90   WNQCPVSCKS*IINYYRTCKHIFCK 164
            W+QC   C S  +++   C H FCK
Sbjct: 1315 WHQCD-ECSSAAVSFCEFCPHSFCK 1338


>AJ295990-1|CAC28350.1| 1437|Homo sapiens putative chromatin modulator
            protein.
          Length = 1437

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 90   WNQCPVSCKS*IINYYRTCKHIFCK 164
            W+QC   C S  +++   C H FCK
Sbjct: 1364 WHQCD-ECSSAAVSFCEFCPHSFCK 1387


>AF332469-1|AAK00355.1| 1437|Homo sapiens putative protein WHSC1L1l
            protein.
          Length = 1437

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 90   WNQCPVSCKS*IINYYRTCKHIFCK 164
            W+QC   C S  +++   C H FCK
Sbjct: 1364 WHQCD-ECSSAAVSFCEFCPHSFCK 1387


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,055,455
Number of Sequences: 237096
Number of extensions: 585615
Number of successful extensions: 1026
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 76,859,062
effective HSP length: 67
effective length of database: 60,973,630
effective search space used: 1341419860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)