Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10e13
(270 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical pr... 28 0.79
Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z70212-8|CAB54284.1| 320|Caenorhabditis elegans Hypothetical pr... 27 1.8
U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical pr... 27 2.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 3.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 3.2
AF067948-6|AAC17701.1| 337|Caenorhabditis elegans Seven tm rece... 26 3.2
AF000198-5|AAB53053.1| 381|Caenorhabditis elegans Hypothetical ... 26 3.2
U29378-11|AAP40540.1| 125|Caenorhabditis elegans Adamts family ... 26 4.2
U29378-10|AAP40541.1| 975|Caenorhabditis elegans Adamts family ... 26 4.2
U29378-9|AAA68721.4| 1020|Caenorhabditis elegans Adamts family p... 26 4.2
AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like p... 26 4.2
Z49937-6|CAA90185.2| 453|Caenorhabditis elegans Hypothetical pr... 25 7.3
U41023-3|AAA82342.2| 435|Caenorhabditis elegans Arrestin family... 25 7.3
AL032648-3|CAA21695.1| 319|Caenorhabditis elegans Hypothetical ... 25 7.3
AF040653-8|AAB95031.1| 532|Caenorhabditis elegans F-box b prote... 25 7.3
Z82288-6|CAB05325.1| 1112|Caenorhabditis elegans Hypothetical pr... 25 9.7
AB201389-1|BAE78829.1| 1113|Caenorhabditis elegans recepotor typ... 25 9.7
>Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical
protein AH6.7 protein.
Length = 329
Score = 28.3 bits (60), Expect = 0.79
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +2
Query: 137 SHLQAYILQNLSFY--ETLFFVLILSVIFETFIFKICKIKQCHCL 265
SHL+ L++L+F + ++FVLI++ +F F F K+ Q C+
Sbjct: 8 SHLEIARLESLNFKISQLIYFVLIITTLF--FTFFALKVIQKKCI 50
>Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical
protein F36G9.7 protein.
Length = 280
Score = 27.1 bits (57), Expect = 1.8
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +3
Query: 12 PFVVIFSLYLGFFFVYIFFQICAFFH 89
P+ +++S+Y GF ++++F C H
Sbjct: 178 PYPILYSIYFGFLALFVYF--CKIHH 201
>Z70212-8|CAB54284.1| 320|Caenorhabditis elegans Hypothetical
protein R04D3.12 protein.
Length = 320
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 131 LLSHLQAYILQNLSFYETLFFVLILSVIFETFIFK 235
+++ LQ ++ + Y +F LILS IF IFK
Sbjct: 120 MVTKLQMSQVEIMKTYVVFYFPLILSTIFVVIIFK 154
>U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical
protein R12C12.3 protein.
Length = 340
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 185 LFFVLILSVIFETFI-FKICKIKQCHCLR 268
+F+ +ILSVIF+ F+ F I I H +R
Sbjct: 179 MFYFIILSVIFDYFLPFLIMTIANYHVIR 207
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 126 LFKIYMKPGIDSNEKKHISGRKYKQKK 46
L + KPG +S K +SG++ KQ+K
Sbjct: 11998 LISSFEKPGQESKTSKTLSGKQKKQEK 12024
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 126 LFKIYMKPGIDSNEKKHISGRKYKQKK 46
L + KPG +S K +SG++ KQ+K
Sbjct: 11998 LISSFEKPGQESKTSKTLSGKQKKQEK 12024
>AF067948-6|AAC17701.1| 337|Caenorhabditis elegans Seven tm
receptor protein 30 protein.
Length = 337
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 3 TY*PFVVIFSLYLGFFFVYIFFQICAFFH 89
TY + +F+ LG FF +I QI FFH
Sbjct: 42 TYRKLLTVFAT-LGMFFSFIEMQIHPFFH 69
>AF000198-5|AAB53053.1| 381|Caenorhabditis elegans Hypothetical
protein T28F2.1 protein.
Length = 381
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 152 YILQNLSFYETLFFVLILSVIFETFI 229
+IL+N FY + VL+L VIF+ +
Sbjct: 10 FILKNNKFYIVIIVVLLLIVIFQWMV 35
>U29378-11|AAP40540.1| 125|Caenorhabditis elegans Adamts family
protein 2, isoform b protein.
Length = 125
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 90 WNQCPVSCKS*IINYYRTCK 149
W+QC VSC + + RTC+
Sbjct: 29 WSQCSVSCGAGVKRRTRTCR 48
>U29378-10|AAP40541.1| 975|Caenorhabditis elegans Adamts family
protein 2, isoform c protein.
Length = 975
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 90 WNQCPVSCKS*IINYYRTCK 149
W+QC VSC + + RTC+
Sbjct: 924 WSQCSVSCGAGVKRRTRTCR 943
>U29378-9|AAA68721.4| 1020|Caenorhabditis elegans Adamts family
protein 2, isoform a protein.
Length = 1020
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 90 WNQCPVSCKS*IINYYRTCK 149
W+QC VSC + + RTC+
Sbjct: 924 WSQCSVSCGAGVKRRTRTCR 943
>AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like
protease protein.
Length = 1020
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 90 WNQCPVSCKS*IINYYRTCK 149
W+QC VSC + + RTC+
Sbjct: 924 WSQCSVSCGAGVKRRTRTCR 943
>Z49937-6|CAA90185.2| 453|Caenorhabditis elegans Hypothetical
protein F14F3.3 protein.
Length = 453
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +2
Query: 89 LESMPGFM*ILNN*LLSHLQAYILQNLSFYETLFFVLILSVIFETFIFKICKIKQCHCL 265
L S+P F+ + L L++ + +SF+ L + ++ V+F+T ++ I + C+
Sbjct: 198 LWSVPVFVITNHYFPLDILRSDAIWEVSFFTRLVYAALIFVVFKTRVYSAWAIAESICV 256
>U41023-3|AAA82342.2| 435|Caenorhabditis elegans Arrestin family
protein 1 protein.
Length = 435
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 220 DVHIQNL*NKTVSLLKI 270
+VHIQN NKTV LKI
Sbjct: 229 NVHIQNNSNKTVKKLKI 245
>AL032648-3|CAA21695.1| 319|Caenorhabditis elegans Hypothetical
protein Y54G9A.4 protein.
Length = 319
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 12 PFVVIFSLYLGFFFVYI 62
PFV + +L LGFFFVY+
Sbjct: 88 PFVQLIAL-LGFFFVYL 103
>AF040653-8|AAB95031.1| 532|Caenorhabditis elegans F-box b protein
protein 50 protein.
Length = 532
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +2
Query: 140 HLQAYILQNLSFYETLFFVLILSVIFETFIFK 235
H+ I L+FY+++ +++ LS + ++FK
Sbjct: 352 HILKNIRPRLAFYDSIGYIVALSSVGSFYLFK 383
>Z82288-6|CAB05325.1| 1112|Caenorhabditis elegans Hypothetical
protein ZK896.8 protein.
Length = 1112
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +2
Query: 149 AYILQNLSFYETLFFVLILSVIFETFIFKICKIKQ 253
+Y+L+ +S + ++++SV+F F+F+ C+ KQ
Sbjct: 494 SYLLE-ISVGSLIILLILISVVF-FFLFRYCENKQ 526
>AB201389-1|BAE78829.1| 1113|Caenorhabditis elegans recepotor type
guanyly cyclase protein.
Length = 1113
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +2
Query: 149 AYILQNLSFYETLFFVLILSVIFETFIFKICKIKQ 253
+Y+L+ +S + ++++SV+F F+F+ C+ KQ
Sbjct: 495 SYLLE-ISVGSLIILLILISVVF-FFLFRYCENKQ 527
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,104,252
Number of Sequences: 27780
Number of extensions: 115143
Number of successful extensions: 389
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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