Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e11
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0757 + 24267599-24268882                                         29   4.4  
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188...    29   5.8  
07_03_0382 + 17470508-17470807,17471449-17474517                       28   7.7  
01_06_0203 - 27487469-27489787                                         28   7.7  

>06_03_0757 + 24267599-24268882
          Length = 427

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 706 NWRSANTWLCSAPWK*PSRCWK 641
           +WR A  W+C  PW    + W+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWR 369


>02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,
            1884442-1884666,1884844-1885224,1885282-1885989,
            1886546-1886839,1887211-1887709,1887949-1888721
          Length = 1257

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -1

Query: 791  KRSKKPTNWPNFDLKNLSSLESYETLKIKLA-LSKYMAMLSTLEMTQ-PLLEIFRNKADT 618
            KR  K  ++P  D   +S+LES     +KLA  S+Y  + S  +     LL+I  +K+ +
Sbjct: 1038 KRIFKAKDYPKGDGVEISTLESLLEKALKLASRSRYTTVASVAQNAAFWLLKIINSKSHS 1097

Query: 617  RQIAAVVFSTLAFI 576
            +Q  A V     +I
Sbjct: 1098 KQELASVVEKFQYI 1111


>07_03_0382 + 17470508-17470807,17471449-17474517
          Length = 1122

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 776 PTNWPNFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEI 639
           P+ WP  +LK+L++L S + LK++          + LEM   L ++
Sbjct: 678 PSGWPLENLKDLNALRSLQILKMEKVSDFSRVKEAMLEMKSQLKDL 723


>01_06_0203 - 27487469-27489787
          Length = 772

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 278 DYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSL 135
           DYD +L  +S+   + +  +T   IVE  Y+H    KN G+ EY   L
Sbjct: 249 DYDGNLRIYSLDASDGSWTVTWQAIVEMHYVHGMCGKN-GICEYLPEL 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,561,963
Number of Sequences: 37544
Number of extensions: 378345
Number of successful extensions: 994
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)