Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e10
         (455 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    57   7e-11
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   1.4  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   1.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   1.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.2  
AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    21   7.2  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    21   7.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    20   9.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   9.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   9.5  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    20   9.5  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    20   9.5  

>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 57.2 bits (132), Expect = 7e-11
 Identities = 31/77 (40%), Positives = 43/77 (55%)
 Frame = -1

Query: 245 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFE 66
           G+ +  +R + +P V   +  H+ P       S      K  K P KRK++RF TRV+ +
Sbjct: 19  GRGQNTQRVQNQPLVIGCDEKHVSPHVIGGITSGGPIPTKSSKYPIKRKRVRFQTRVKVQ 78

Query: 65  ERYKSGKNKWFFQKLRF 15
           E  KSG+NKWFFQK RF
Sbjct: 79  EGSKSGRNKWFFQKGRF 95


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 356  DPRTGHLGPALLYPASLF 409
            D +TGH+ P   YP  ++
Sbjct: 2520 DKQTGHVAPLYYYPGDVY 2537



 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 435 KGISLQDGQNNEAG*SSAGP 376
           +  +L  G N++ G  SAGP
Sbjct: 872 QSFTLTKGNNHDQGVPSAGP 891


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 322 VPPTSHTGMPSSLVSTGTPGKCTRGWERIKST 227
           +P T H GM  SL    +PG C  G   ++ T
Sbjct: 372 LPETMHMGMGPSLTPLASPG-CGPGQGGLQPT 402


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 212 KPFVKVVNYNHLMPTRY 162
           K F  +VN  HL+ T+Y
Sbjct: 83  KNFTNIVNLTHLLETQY 99


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 322 VPPTSHTGMPSSLVSTGTPGKCTRGWERIKST 227
           +P T H GM  SL    +PG C  G   ++ T
Sbjct: 372 LPETMHMGMGPSLTPLASPG-CGPGQGGLQPT 402


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 362 AGRKAIVVKNYDEGTSDKP 306
           AG+K   VK  DE   +KP
Sbjct: 73  AGKKPENVKKEDESDEEKP 91


>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 304 YGLSEVPSS*FL 339
           +GL EVPSS FL
Sbjct: 55  HGLPEVPSSRFL 66


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 304 YGLSEVPSS*FL 339
           +GL EVPSS FL
Sbjct: 55  HGLPEVPSSRFL 66


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -2

Query: 328 TKVPPTSHTGMPSSLVSTGTPGKC 257
           ++ PPT   G+P  +V      +C
Sbjct: 437 SQAPPTYDYGIPQGVVLNPLDARC 460


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 319 PPTSHTGMPSSLVSTGTPG 263
           PP +H G+P   + + T G
Sbjct: 137 PPPAHMGIPPYQLDSKTAG 155


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 319 PPTSHTGMPSSLVSTGTPG 263
           PP +H G+P   + + T G
Sbjct: 29  PPPAHMGIPPYQLDSKTAG 47


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 185 YSLQP*RKALSWTSCGFY 238
           +SLQ   + L +++CGF+
Sbjct: 333 FSLQLAHQKLEFSACGFF 350


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 185 YSLQP*RKALSWTSCGFY 238
           +SLQ   + L +++CGF+
Sbjct: 158 FSLQLAHQKLEFSACGFF 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,665
Number of Sequences: 336
Number of extensions: 2339
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)