Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e08
         (838 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-...    48   2e-04
UniRef50_Q5VZR2 Cluster: Protein FAM22G precursor; n=51; Fungi/M...    35   2.2  
UniRef50_Q9AJP5 Cluster: Sensor protein; n=2; Myxococcus xanthus...    34   3.8  
UniRef50_Q8RT51 Cluster: ABC-transporter protein; n=2; Pseudomon...    33   6.7  
UniRef50_Q09AC4 Cluster: Putative uncharacterized protein; n=1; ...    33   8.9  

>UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-box
           protein - Bombyx mori (Silk moth)
          Length = 272

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 23/37 (62%), Positives = 24/37 (64%)
 Frame = -2

Query: 558 RGPSXXXXXXXXXXXXXLPMRARPRHPEAVMCGTSFM 448
           +GPS             LPMRARPRHPEAVMCGTSFM
Sbjct: 236 QGPSLKVTNLLVLLLRQLPMRARPRHPEAVMCGTSFM 272



 Score = 44.4 bits (100), Expect = 0.004
 Identities = 33/88 (37%), Positives = 33/88 (37%)
 Frame = -1

Query: 805 PAQPRGAQGDEGQEGGIVPSQRSXXXXXXXXXXXXXXXXXXXXXXXXRVXXXXXXXXXXX 626
           P    GAQGDEGQEGGIVPSQRS                        RV           
Sbjct: 154 PPNQGGAQGDEGQEGGIVPSQRSFFRRNFRGGRRGGGPGPMNRGGFRRVRPRNFQPGQGG 213

Query: 625 XXXXXXXXXXXXXASATTSNQQQGAKPK 542
                        ASATTSNQQQG   K
Sbjct: 214 QNQAQRQNGQDGDASATTSNQQQGPSLK 241


>UniRef50_Q5VZR2 Cluster: Protein FAM22G precursor; n=51;
           Fungi/Metazoa group|Rep: Protein FAM22G precursor - Homo
           sapiens (Human)
          Length = 622

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -3

Query: 794 KGCTRR*GSRRRHCTISAQFFPSQFSRWTPWGRSWPNE*RRV-----PPSASAQFPAGAG 630
           KGC R   +  RH T      PS+F+      R  P+  +RV     PP  +AQ P G G
Sbjct: 373 KGCGR---AAPRHGTARLDSSPSEFAAGQEAAREVPDPQQRVSVETSPPQTAAQDPQGQG 429

Query: 629 RTKSGSA 609
           R ++G A
Sbjct: 430 RVRTGMA 436


>UniRef50_Q9AJP5 Cluster: Sensor protein; n=2; Myxococcus xanthus|Rep:
            Sensor protein - Myxococcus xanthus
          Length = 1384

 Score = 34.3 bits (75), Expect = 3.8
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
 Frame = -3

Query: 770  SRRRHCTISAQFFPSQFSR---WTPWG-RSWPNE*RRVPPSASA--QFPAGAGRTKSGSA 609
            SRRR  + S+   PS+  R   W+ W  R+W +   R P ++S+  ++   AGR ++G  
Sbjct: 1277 SRRRSASCSSPAVPSRPPRGRSWSAWRIRAWRSPSTRKPCASSSGPKWRVLAGRRRAGRH 1336

Query: 608  PKWPG 594
              WPG
Sbjct: 1337 SSWPG 1341


>UniRef50_Q8RT51 Cluster: ABC-transporter protein; n=2; Pseudomonas
           aeruginosa|Rep: ABC-transporter protein - Pseudomonas
           aeruginosa
          Length = 585

 Score = 33.5 bits (73), Expect = 6.7
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 606 WR*A*FCPPCPGWKLRGRTRRNPPLF 683
           WR +    PC G+  RGR RRN PLF
Sbjct: 80  WRPSSMMRPCTGYMHRGRARRNSPLF 105


>UniRef50_Q09AC4 Cluster: Putative uncharacterized protein; n=1;
           Stigmatella aurantiaca DW4/3-1|Rep: Putative
           uncharacterized protein - Stigmatella aurantiaca DW4/3-1
          Length = 733

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
 Frame = -3

Query: 806 PRPTKGCTRR*GSRRRHCTISA---QFFPSQFSRWTPWGRSWPNE*RRVPPSASAQFPAG 636
           P PT     R  SRRR  +IS+   + FPS  +  T W  SWP   R+      +   A 
Sbjct: 54  PPPT---ATRPSSRRRITSISSVNKKAFPSATAPTTAWALSWPGSRRKRGWRPCSTGSAA 110

Query: 635 AGRTKSG------SAPKWPGWRCLSYNIKPTAG 555
           +  ++SG      S+P  P  RCLS + +P  G
Sbjct: 111 SRSSQSGWYGTGASSPAAPR-RCLSASCRPEPG 142


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 789,572,936
Number of Sequences: 1657284
Number of extensions: 16209148
Number of successful extensions: 42185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42160
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72963732758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)