Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e08
         (838 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY645021-1|AAT92557.1|  163|Anopheles gambiae even-skipped protein.    29   0.23 
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    25   2.9  
AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein...    24   5.0  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    24   5.0  
AJ439060-14|CAD27765.1|  471|Anopheles gambiae putative acetyltr...    23   8.7  

>AY645021-1|AAT92557.1|  163|Anopheles gambiae even-skipped protein.
          Length = 163

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 309 PAPYVPIQIKNSQRSQCDTTSKTNTHQLYRQ 401
           P+PY P+ +  SQ    DT   T  HQL+ Q
Sbjct: 47  PSPYAPLSMSKSQTPPQDTVG-TAQHQLHHQ 76


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 672  GSAECVRAISSRGREDKIRLSAKMARMEMPQLQHQTNSR 556
            G    + + S R  E +  + A+MAR+     QHQ + R
Sbjct: 1071 GERPSMPSSSPRTSERRANIRARMARLRQRHRQHQQDER 1109


>AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 695

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 338 LYLYWNVRSGVSNLELHRYHWI 273
           +Y+ ++  S +   E+HRY W+
Sbjct: 302 VYVLFSYASSIDRFEVHRYCWM 323


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 404 QVEVECDTTRINMHYINDVP 463
           QV+     + IN+HY+ND P
Sbjct: 686 QVDGSSGASAINIHYLNDRP 705


>AJ439060-14|CAD27765.1|  471|Anopheles gambiae putative
           acetyltransferase protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -1

Query: 532 PVGTTIETTTNESQA*TSRGRYVWHIIYVVHVDSSCVTLHLNLSCLYN**VLVFDVV 362
           PVG+T+E  T          + +W+I  +V+  +S VTL  +    Y    +V+D++
Sbjct: 411 PVGSTLEVETGPPPEKLCVDQLIWNIRNIVYNQTS-VTLRKH-KAAYKGDEIVYDLL 465


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 851,841
Number of Sequences: 2352
Number of extensions: 17465
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88478514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)