Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e08
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80444-2|AAB37788.1|  305|Caenorhabditis elegans Collagen protei...    29   4.1  
Z66561-3|CAA91455.1|  422|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GA...    28   7.2  
AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GA...    28   7.2  
AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion def...    28   7.2  

>U80444-2|AAB37788.1|  305|Caenorhabditis elegans Collagen protein
           58 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 826 RIRTSWTPAQPRGAQGDEGQEGG 758
           R+R    P  PRGA+GD G +GG
Sbjct: 226 RVRRIPGPPGPRGAEGDSGVQGG 248


>Z66561-3|CAA91455.1|  422|Caenorhabditis elegans Hypothetical
           protein F08G12.3 protein.
          Length = 422

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 214 SIQPKHINSSIYYDKNI 264
           S+QP H +S  YYD+NI
Sbjct: 61  SVQPNHTSSPAYYDENI 77


>AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GABA
           receptor EXP-1A protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 308 VSNLELHRYHWIKDVIFLS*YIDEFICFGCILNYELYFKLLLISI 174
           ++   +HR+HWI  ++F       F+ F C+  + +Y  L ++S+
Sbjct: 478 ITQRTMHRFHWISQMLFFF----GFVIF-CLFYFLIYPNLHIVSV 517


>AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GABA
           receptor EXP-1B protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 308 VSNLELHRYHWIKDVIFLS*YIDEFICFGCILNYELYFKLLLISI 174
           ++   +HR+HWI  ++F       F+ F C+  + +Y  L ++S+
Sbjct: 484 ITQRTMHRFHWISQMLFFF----GFVIF-CLFYFLIYPNLHIVSV 523


>AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion
           defective (defecation)protein 1 protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 308 VSNLELHRYHWIKDVIFLS*YIDEFICFGCILNYELYFKLLLISI 174
           ++   +HR+HWI  ++F       F+ F C+  + +Y  L ++S+
Sbjct: 484 ITQRTMHRFHWISQMLFFF----GFVIF-CLFYFLIYPNLHIVSV 523


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,477,591
Number of Sequences: 27780
Number of extensions: 396194
Number of successful extensions: 1025
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)