Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e05
         (833 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    24   1.7  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    24   1.7  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   3.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.1  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 351 SVFMQEKLDRIKNDYNNMHKSFKE 280
           + +  EK+ ++K +YN   K F+E
Sbjct: 179 TAYQNEKITKLKINYNPFAKGFRE 202


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -3

Query: 651 SLHFNVYSINRNVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSL 508
           +L +    I R +  V    VTS   W  +ND+++       L ++ L
Sbjct: 238 ALAYRFGQITRRIAAVASEKVTSEKSWIALNDDYNRLCHLCFLLDEKL 285


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 618 NVVDVIKCSVTSVAQWNKINDNFDA 544
           N++ VIK S   +  W  +  +FDA
Sbjct: 486 NLLSVIKSSFLDINTWKMLVKSFDA 510


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 219 KLAAKNARLSNENKVLSNKNIELIKHKNLLQNEY 118
           +L+     L N +K +S +  ELI      QNEY
Sbjct: 296 ELSDSEKTLCNGSKGISPEQEELIHRLVYFQNEY 329


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,376
Number of Sequences: 336
Number of extensions: 3057
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22932949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)