Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e05
         (833 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    31   0.043
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   2.1  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   2.8  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   6.6  
AY659931-1|AAT51799.1|  167|Anopheles gambiae lysozyme i-1 protein.    23   8.7  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 31.1 bits (67), Expect = 0.043
 Identities = 31/139 (22%), Positives = 59/139 (42%)
 Frame = -3

Query: 567 KINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNI 388
           K ++ +DA     V  EK + ++ +  +   ++      ES+    K  +D   + Q N+
Sbjct: 338 KHDETYDALKAERVEKEKLVKEEIKQYDELVSA-----KESKESTLKNSLDKFAKVQANM 392

Query: 387 KRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKLAA 208
           +   +  K     +  +EK  R+    +   K+ KE++      E   +   +  AKL A
Sbjct: 393 RATNERRKKTLEQIAAEEK--RLLELQDVPKKNKKEIEESEAKIESLTRQKTEVEAKLTA 450

Query: 207 KNARLSNENKVLSNKNIEL 151
             A L +E KVL  +  +L
Sbjct: 451 NLATLKDETKVLLEEKEKL 469


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 390  IKRQLD-LNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKL 214
            ++ +LD L K+Q  ++   +KLDR+     + ++ F+  + K    + A + + ++   L
Sbjct: 1010 LQSKLDTLEKIQTPNMKAMQKLDRVTEKIQSTNEEFEAARKKAKKAKAAFEKVKNERCTL 1069


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 5/140 (3%)
 Frame = -3

Query: 519  EKSLLDDAEDSNNAANSDDTMLSESQAILKKL--QIDIAEQTQLNIKRQLD-LNKLQQTS 349
            EK L D   +      + ++++SE Q    K     D  E+ Q +I+   D L+++++  
Sbjct: 694  EKELADFRAELKQTEANINSIVSEMQKTETKQGKSKDAFEKIQADIRLMKDELSRIERFR 753

Query: 348  VFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYA--KLAAKNARLSNENKV 175
               +  L + K +   M  + + L+ +      +  S+ D +    L  +  RL+ ENK 
Sbjct: 754  SPKERSLAQCKANLEAMTSTKEGLENELHQELMSQLSVQDQHEVDSLNDEIRRLNQENKE 813

Query: 174  LSNKNIELIKHKNLLQNEYT 115
                 + L   KN L+N  T
Sbjct: 814  AFTSRMSLEVTKNKLENLLT 833


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/60 (18%), Positives = 24/60 (40%)
 Frame = -3

Query: 327 DRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKLAAKNARLSNENKVLSNKNIELI 148
           D+I+N    +  S KELQ +     +  + L +  +K      ++  + +        L+
Sbjct: 629 DKIRNQRGQIENSIKELQERCAELREQKRDLQEQLSKYQQTKMKVKRQEQKCKELTARLV 688


>AY659931-1|AAT51799.1|  167|Anopheles gambiae lysozyme i-1 protein.
          Length = 167

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 392 LSCVCSAMSICSFFSIACDSD 454
           LSC+C A S C   S+ C  D
Sbjct: 42  LSCICEASSGCD-ASLRCSGD 61


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,429
Number of Sequences: 2352
Number of extensions: 11643
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88065063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)