Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e02
         (561 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    24   0.78 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    24   1.0  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    23   1.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   5.5  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.2  
AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochr...    21   7.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   9.6  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 24.2 bits (50), Expect = 0.78
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +1

Query: 238 ATVIFGILYSLTSFVTVPTTTAIKPSRVGFF---MWRAKRDTEIGGRLIRLIKSRRR 399
           +T I  I + +   VTV  T A+K S++  F   M R     +  G  I  ++ +RR
Sbjct: 76  STAILEIAFEVIFIVTVWMTGAVKHSKIAHFLNKMIRLDERFQSVGLQIDTVREKRR 132


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 542 KMGIDINHKHDRKV 501
           K+G++INHK D +V
Sbjct: 406 KLGLEINHKEDFRV 419


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +1

Query: 250 FGILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRDT--EIGGRLIRLIKSRRRTI 405
           F I Y     VT+ T  A + +  G F+W  + D   E  G    L+K+  + I
Sbjct: 322 FWIGYDNEQSVTIKTEYAKEKNLAGVFIWSIETDDMHEFCGEKNGLLKAVNKAI 375


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +3

Query: 306 QTLTSWLLHVARQTRHRDWW 365
           QTL  WL H        DW+
Sbjct: 658 QTLAMWLNHNPNYAEVTDWY 677


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 219  FGNMKSSHRHLRYLVQS 269
            FG + S H HL  L++S
Sbjct: 1301 FGKLCSLHHHLSKLIKS 1317


>AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q2 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 308 LIAVVVGTVTNDVRLYKIPKMTVAALHV 225
           LI+  +G      + Y IPK T+  +H+
Sbjct: 64  LISRALGEDVRTQKGYLIPKDTITIIHI 91


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 116 DLVPVLSSCQSEHEEPADQK*EFLLQQP 199
           +L+  L   Q+E+E P+++  + ++ QP
Sbjct: 317 ELIHRLVYFQNEYEHPSEEDVKRIINQP 344


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 228 CYRKSSCTHFGCWRRNSYF*SAGSSC 151
           CY       FG  +R S+F +  +SC
Sbjct: 150 CYSTYGIQVFGTMQRTSFFKTFLNSC 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,222
Number of Sequences: 336
Number of extensions: 3144
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)