Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e01
         (870 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ278684-2|CAB99192.1|  989|Drosophila melanogaster endonuclease...    30   3.6  
AE013599-3404|AAF46853.2| 2733|Drosophila melanogaster CG4554-PA...    30   3.6  

>AJ278684-2|CAB99192.1|  989|Drosophila melanogaster
           endonuclease/reverse transcriptase protein.
          Length = 989

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +3

Query: 447 SCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCVRSSILAITSFV 626
           SC  +++ +  S RAVS +    +I     +SD  A A S +  ++  ++   LA   + 
Sbjct: 782 SCVSTKKTYLDSARAVSRTMALRLIRGFRTISDDAAHALSGITPIDLDIKGKYLASEGYT 841

Query: 627 SI 632
            +
Sbjct: 842 QL 843


>AE013599-3404|AAF46853.2| 2733|Drosophila melanogaster CG4554-PA
            protein.
          Length = 2733

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
 Frame = -3

Query: 616  VIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANR 437
            V+A++  + +  +   A   E N  L+  + + +VA        + CE+ +    Q+   
Sbjct: 2078 VVARMFQILKNFSTFGATRQEENAQLVRASFKAVVA------LLRKCEDYQLSNEQIEQL 2131

Query: 436  MADIAQDVI-AKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDY 260
            +  I Q++   + S+  +  +L    VG       +   RSL   +KRLG   +I SSDY
Sbjct: 2132 LLHIEQELQEGECSSQTMVFTLLKALVGR------KVDSRSLHDLMKRLGDLSIISSSDY 2185

Query: 259  V 257
            V
Sbjct: 2186 V 2186


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,108,737
Number of Sequences: 53049
Number of extensions: 912321
Number of successful extensions: 3581
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3574
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4209111660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)