Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10d24
(282 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce... 94 3e-21
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 27 0.67
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 26 1.2
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 1.2
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 25 1.6
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 25 2.7
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 24 3.6
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p... 23 8.3
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 23 8.3
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 23 8.3
>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 94.3 bits (224), Expect = 3e-21
Identities = 46/79 (58%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Frame = -3
Query: 235 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSK-MYVVCGAI 59
M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ + VD A GR K Y + G +
Sbjct: 1 MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59
Query: 58 RRMGESDDCIVRLTKKDGI 2
R GESDDCI RLT +DG+
Sbjct: 60 RSKGESDDCINRLTTQDGL 78
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 26.6 bits (56), Expect = 0.67
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +3
Query: 105 PVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYVR 248
P+ A+T TE W++A+ +A F S C Y+R
Sbjct: 482 PILQKICAVTRTTETWAVAFAHYEMAVAFFESNGSKKEGLKHCDAYLR 529
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 1.2
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = +3
Query: 84 LDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYVR 248
L VS+ S ++ W+ W L E F+ + TN+ + Y+R
Sbjct: 170 LAVSSNSSTVSSLELVSQIASIWAFDWPMMNLQETFIYWDRCTNACLRLLLCYIR 224
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 1.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 135 SCTEAWSLAWMRRLLAEHFLGQYKST 212
S T+A SL W + +H + Q+KST
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKST 674
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 1.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 153 SLAWMRRLLAEHFLGQYKSTNSPASFCILYV 245
SL M +L EH+ G++ SP CI+ V
Sbjct: 575 SLERMIAILTEHYAGKWPFWMSPRQVCIIPV 605
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 2.7
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = +2
Query: 59 DSPT--DNIHFRCVSSTTCGGVYVSN 130
D PT D I C CGG+Y +N
Sbjct: 214 DEPTRHDIIRHACPGGGACGGMYTAN 239
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 24.2 bits (50), Expect = 3.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 194 RAVQVNEFTGVVLHFICTST 253
RAV + + TG VLHF T T
Sbjct: 808 RAVPLRDCTGSVLHFFGTMT 827
>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 402
Score = 23.0 bits (47), Expect = 8.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 42 DSPILRIAPQTTYILDVSAARP 107
D+P + + P ++YI SA P
Sbjct: 302 DAPGMAVGPNSSYITSTSAGTP 323
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 23.0 bits (47), Expect = 8.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 162 WMRRLLAEHFLGQYKSTNSPASFCILYVRPHGTR 263
W + +LA + + +PA C++ RP+G R
Sbjct: 58 WEKLVLAARVIA---TIENPADVCVISSRPYGHR 88
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 23.0 bits (47), Expect = 8.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 187 ISSGSTSQRIHRRRSAFYMYVHTVHG 264
ISS +HRR S + + + +HG
Sbjct: 147 ISSHEKMNYVHRRLSQYAIMIGAIHG 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,193,685
Number of Sequences: 5004
Number of extensions: 19793
Number of successful extensions: 61
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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