Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d23
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    32   0.091
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    27   2.6  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    27   4.5  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    26   6.0  

>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 32.3 bits (70), Expect = 0.091
 Identities = 19/71 (26%), Positives = 38/71 (53%)
 Frame = +1

Query: 220  LDRFISQQKHISSSYVRACINKVTLCNVTKKLHRDLNALKLSKI*NPYYRRKRALLHLQR 399
            + +++  ++ +++ YV    +KVT+CN   ++    N  +L+K+   +    R L HL R
Sbjct: 984  MSKYLPVKRALAAEYVVDTGDKVTVCNKNAEVSAKHNYYRLAKV---WLMLGRLLGHLSR 1040

Query: 400  GRAKDNI*SEK 432
               KD+I  E+
Sbjct: 1041 TENKDHINDEE 1051


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 702 YFPFLRLRWARRCFTSRLFFLSSMVDADSAGSCVPTV 592
           YF +LR  W ++  T R + L  + D ++  SC+  V
Sbjct: 300 YFTYLRPSWLKKLGTRRAYELIKIEDQNTDYSCIGPV 336


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +3

Query: 579 HNTAKQ*GRKIRPNPHLPYCSKKINGK*STVVPTSTSKMGSKAPSCPPQPQKWEV--KHR 752
           H+++    RK  P+P+ PY +   +   S+  P+S    GS A S P       +  K  
Sbjct: 283 HSSSDGKSRK-HPSPYKPYLNSSHDTLGSSTRPSSADTAGSPATSPPATADSKTIVSKTI 341

Query: 753 SAHLNLKNGK*STEVPTSTFTY 818
           SA    +        P+S F Y
Sbjct: 342 SASTTQQTEPLQQTTPSSDFEY 363


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 374 SVHSYICSEDEPKITFEVRRMDIAQLSQTAQFET 475
           ++HS   S D P    E    D+ + S T++FET
Sbjct: 6   TLHSVSISTDFPSPNVESEAADVNEYSSTSKFET 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,629,300
Number of Sequences: 5004
Number of extensions: 76560
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)