Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10d23
(858 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p pro... 31 1.5
AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptio... 31 1.5
AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein. 31 1.5
AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA... 31 1.5
AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD... 31 1.5
AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB... 31 1.5
AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC... 31 1.5
AY119621-1|AAM50275.1| 601|Drosophila melanogaster LD46360p pro... 29 6.2
AY069519-1|AAL39664.1| 739|Drosophila melanogaster LD23757p pro... 29 6.2
AE014134-3024|AAN11023.1| 739|Drosophila melanogaster CG10473-P... 29 6.2
AE014134-3023|AAF53746.1| 739|Drosophila melanogaster CG10473-P... 29 6.2
BT010117-1|AAQ22586.1| 1483|Drosophila melanogaster GH01154p pro... 29 8.2
AE014296-1480|AAF50395.2| 1126|Drosophila melanogaster CG32352-P... 29 8.2
AE014296-1479|AAF50397.2| 1653|Drosophila melanogaster CG32352-P... 29 8.2
AE014296-1478|AAF50396.2| 1709|Drosophila melanogaster CG32352-P... 29 8.2
>AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p
protein.
Length = 1153
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 687 SKMGSKAPSCPPQPQKWEVKHRSAHL 764
S S+ PS PPQPQ+++ H S H+
Sbjct: 125 SNSNSQPPSMPPQPQQFQSPHPSPHM 150
>AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptional
corepressor Atro protein.
Length = 1985
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 687 SKMGSKAPSCPPQPQKWEVKHRSAHL 764
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.
Length = 1966
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 687 SKMGSKAPSCPPQPQKWEVKHRSAHL 764
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA,
isoform A protein.
Length = 1966
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 687 SKMGSKAPSCPPQPQKWEVKHRSAHL 764
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD,
isoform D protein.
Length = 1985
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 687 SKMGSKAPSCPPQPQKWEVKHRSAHL 764
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB,
isoform B protein.
Length = 1985
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 687 SKMGSKAPSCPPQPQKWEVKHRSAHL 764
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC,
isoform C protein.
Length = 1988
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 687 SKMGSKAPSCPPQPQKWEVKHRSAHL 764
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AY119621-1|AAM50275.1| 601|Drosophila melanogaster LD46360p
protein.
Length = 601
Score = 29.5 bits (63), Expect = 6.2
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 661 KAPSCPPQPQKWEVKHRRAHLNLKNGK*SIEVPTSTSKMGSKAPKCPPRPSHINFEEKAA 840
K+ S P P + RR+ +N K +E P ++ PK PP IN E +A+
Sbjct: 9 KSSSPAPVPVAVARRSRRSRKVSENEKTEVETPVVAQNNEAECPKVPPASQEIN-EARAS 67
Query: 841 CHQ 849
+
Sbjct: 68 SEE 70
>AY069519-1|AAL39664.1| 739|Drosophila melanogaster LD23757p
protein.
Length = 739
Score = 29.5 bits (63), Expect = 6.2
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 661 KAPSCPPQPQKWEVKHRRAHLNLKNGK*SIEVPTSTSKMGSKAPKCPPRPSHINFEEKAA 840
K+ S P P + RR+ +N K +E P ++ PK PP IN E +A+
Sbjct: 9 KSSSPAPVPVAVARRSRRSRKVSENEKTEVETPVVAQNNEAECPKVPPASQEIN-EARAS 67
Query: 841 CHQ 849
+
Sbjct: 68 SEE 70
>AE014134-3024|AAN11023.1| 739|Drosophila melanogaster CG10473-PB,
isoform B protein.
Length = 739
Score = 29.5 bits (63), Expect = 6.2
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 661 KAPSCPPQPQKWEVKHRRAHLNLKNGK*SIEVPTSTSKMGSKAPKCPPRPSHINFEEKAA 840
K+ S P P + RR+ +N K +E P ++ PK PP IN E +A+
Sbjct: 9 KSSSPAPVPVAVARRSRRSRKVSENEKTEVETPVVAQNNEAECPKVPPASQEIN-EARAS 67
Query: 841 CHQ 849
+
Sbjct: 68 SEE 70
>AE014134-3023|AAF53746.1| 739|Drosophila melanogaster CG10473-PA,
isoform A protein.
Length = 739
Score = 29.5 bits (63), Expect = 6.2
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 661 KAPSCPPQPQKWEVKHRRAHLNLKNGK*SIEVPTSTSKMGSKAPKCPPRPSHINFEEKAA 840
K+ S P P + RR+ +N K +E P ++ PK PP IN E +A+
Sbjct: 9 KSSSPAPVPVAVARRSRRSRKVSENEKTEVETPVVAQNNEAECPKVPPASQEIN-EARAS 67
Query: 841 CHQ 849
+
Sbjct: 68 SEE 70
>BT010117-1|AAQ22586.1| 1483|Drosophila melanogaster GH01154p protein.
Length = 1483
Score = 29.1 bits (62), Expect = 8.2
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -1
Query: 231 EAVEDASPSGTAVLQSPGNPRPRASAK-TIKTIPRCAFASFLCVAFVCAVLVETCLG 64
E V D +P GT SP P P+ + T PR AF V AV E+ LG
Sbjct: 851 EVVSDETPEGTGGTASPTQPAPKKKFEFNFGTYPR-AFRKKKPVEEPVAVATESSLG 906
>AE014296-1480|AAF50395.2| 1126|Drosophila melanogaster CG32352-PC,
isoform C protein.
Length = 1126
Score = 29.1 bits (62), Expect = 8.2
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -1
Query: 231 EAVEDASPSGTAVLQSPGNPRPRASAK-TIKTIPRCAFASFLCVAFVCAVLVETCLG 64
E V D +P GT SP P P+ + T PR AF V AV E+ LG
Sbjct: 494 EVVSDETPEGTGGTASPTQPAPKKKFEFNFGTYPR-AFRKKKPVEEPVAVATESSLG 549
>AE014296-1479|AAF50397.2| 1653|Drosophila melanogaster CG32352-PA,
isoform A protein.
Length = 1653
Score = 29.1 bits (62), Expect = 8.2
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -1
Query: 231 EAVEDASPSGTAVLQSPGNPRPRASAK-TIKTIPRCAFASFLCVAFVCAVLVETCLG 64
E V D +P GT SP P P+ + T PR AF V AV E+ LG
Sbjct: 1021 EVVSDETPEGTGGTASPTQPAPKKKFEFNFGTYPR-AFRKKKPVEEPVAVATESSLG 1076
>AE014296-1478|AAF50396.2| 1709|Drosophila melanogaster CG32352-PB,
isoform B protein.
Length = 1709
Score = 29.1 bits (62), Expect = 8.2
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -1
Query: 231 EAVEDASPSGTAVLQSPGNPRPRASAK-TIKTIPRCAFASFLCVAFVCAVLVETCLG 64
E V D +P GT SP P P+ + T PR AF V AV E+ LG
Sbjct: 1077 EVVSDETPEGTGGTASPTQPAPKKKFEFNFGTYPR-AFRKKKPVEEPVAVATESSLG 1132
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,463,401
Number of Sequences: 53049
Number of extensions: 915124
Number of successful extensions: 3061
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3057
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4126982652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -