Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d23
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
 Frame = +3

Query: 483 DSFTKLARTGNV*NSSALLSAIFTDTDTEHYRHNTAKQ*GRKIRPNPHLP-YCSKKINGK 659
           D  T +    NV     L  +I      ++   NT  Q   +I   P +P YC       
Sbjct: 743 DQSTVIQTGANVNLWQPLSVSIPPPPSAQNVPQNTNSQAIPRIPILPMIPVYCVPVPQVN 802

Query: 660 *STVVPTSTSKMGSKAPSCPPQ 725
            ST++     K+ S  P  PPQ
Sbjct: 803 DSTILSPVREKLSSSQPMQPPQ 824


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -1

Query: 201 TAVLQSPGNPRPRASAKTIKTIPRCAF--ASFLCVAF 97
           TA L+    P P   AKTI  I R  F  A F+ + F
Sbjct: 444 TAELRKKEPPHPIRVAKTIDVIARITFPVAYFMFLTF 480


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -1

Query: 201 TAVLQSPGNPRPRASAKTIKTIPRCAF--ASFLCVAF 97
           TA L+    P P   AKTI  I R  F  A F+ + F
Sbjct: 430 TAELRKKEPPHPIRVAKTIDVIARITFPVAYFMFLTF 466


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -1

Query: 201 TAVLQSPGNPRPRASAKTIKTIPRCAF--ASFLCVAF 97
           TA L+    P P   AKTI  I R  F  A F+ + F
Sbjct: 464 TAELRKKEPPHPIRVAKTIDVIARITFPVAYFMFLTF 500


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -1

Query: 201 TAVLQSPGNPRPRASAKTIKTIPRCAF--ASFLCVAF 97
           TA L+    P P   AKTI  I R  F  A F+ + F
Sbjct: 413 TAELRKKEPPHPIRVAKTIDVIARITFPVAYFMFLTF 449


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +1

Query: 760 TSTSKMGSKAPKCPPRPSHINFEEKA-ACHQGPL 858
           TST    S+A   PP P   NF   A A    PL
Sbjct: 289 TSTPNFLSEAKIFPPTPGSFNFSMAALATEHTPL 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,840
Number of Sequences: 438
Number of extensions: 5582
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)