Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d20
         (826 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1059 - 10775143-10776063                                         36   0.039
10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865...    29   5.9  
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615...    29   5.9  
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356     28   7.8  
07_01_0845 + 6866211-6867143                                           28   7.8  
05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,281...    28   7.8  

>08_01_1059 - 10775143-10776063
          Length = 306

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 90  HTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVP 203
           H NA  ++ + A+RG      A A GRGL GFG+  VP
Sbjct: 125 HQNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 162


>10_07_0124 -
           13085820-13085997,13086235-13086362,13086475-13086550,
           13086726-13086803,13086985-13087064,13087411-13087480,
           13087730-13087887,13088225-13088315,13088379-13088455,
           13088612-13088686,13088798-13089071,13089911-13090041,
           13090154-13090323,13090413-13090971,13091077-13091127
          Length = 731

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = -1

Query: 286 DLVDASSDVAGRDMLLLRDEAVEDASPSGTAVLPNPGNPRPRASAKTIKTIPRCAFA--- 116
           DL   S DV G  +++L +  ++        +      PR   S++ ++ +  C      
Sbjct: 287 DLEQCSGDVLGELVMMLSEWVIKIPIFFVMGIATTLDAPRKLLSSEDLQRLEPCKLTLGS 346

Query: 115 -SFLCVAFVCAVLVKTCLGXCV 53
            S    A V A+LVK C G C+
Sbjct: 347 PSDRMNALVEAILVKPCAGFCI 368


>08_02_1143 +
           24659105-24659386,24660171-24660272,24661259-24661521,
           24661775-24661874,24662080-24662238,24662327-24663147,
           24663299-24663618,24665831-24667398
          Length = 1204

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 653 GSKAPSCPPRPSHINFEEKAACHRGPL 733
           G ++ +CPP P+H+ + + AA    PL
Sbjct: 23  GWRSATCPPTPTHLTYIDGAASRSWPL 49


>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
          Length = 480

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +2

Query: 620 PHLPYCSKK*TGSKAP--SCPPRPSHINFEEKAACHRGPLVRMMW-KQGSRPSSS 775
           PH P C ++     AP  S PPRPSH      +       VR  + +Q SR +++
Sbjct: 272 PHNPPCQEEKKSGMAPPPSPPPRPSHRRARSMSITGSAKSVRFPFTRQASRSTTT 326


>07_01_0845 + 6866211-6867143
          Length = 310

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 665 PSCPPRPSHINFEEKAACHRGP 730
           P  PP P H +  E AA H GP
Sbjct: 180 PPPPPPPQHAHSAESAAAHAGP 201


>05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,
            2816180-2816292,2818409-2818506,2818636-2818815,
            2818893-2819114,2819270-2819404,2819489-2819771,
            2819858-2819931,2820164-2820384,2820463-2820550,
            2820651-2820744,2820827-2821015,2821369-2821400,
            2821542-2821621,2821718-2821807,2821911-2821980,
            2822240-2822285,2822370-2822428,2822588-2822753,
            2822929-2823107,2823186-2823392,2823529-2823633,
            2823701-2823703
          Length = 1152

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 695  NFEE-KAACHRGPLVRMMWKQGSRPSSSLLPRCEAAPRV 808
            N++E KAA    PL R  W   SR +  L  RCE   R+
Sbjct: 1059 NWDELKAAFRMSPLFRFDWFVKSRTTQELARRCETLIRL 1097


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,070,995
Number of Sequences: 37544
Number of extensions: 549649
Number of successful extensions: 1591
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)