Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10d20
(826 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ356012-1|ABC86955.1| 818|Homo sapiens ZNF438 transcript varia... 33 1.7
DQ356011-1|ABC86954.1| 818|Homo sapiens ZNF438 transcript varia... 33 1.7
BC104757-1|AAI04758.1| 828|Homo sapiens zinc finger protein 438... 33 1.7
BC101622-1|AAI01623.1| 828|Homo sapiens ZNF438 transcript varia... 33 1.7
AL359532-3|CAM17193.1| 828|Homo sapiens zinc finger protein 438... 33 1.7
AL359532-2|CAI13438.1| 818|Homo sapiens zinc finger protein 438... 33 1.7
AL359532-1|CAI13437.1| 392|Homo sapiens zinc finger protein 438... 33 1.7
AK131357-1|BAD18510.1| 779|Homo sapiens protein ( Homo sapiens ... 33 1.7
AF440405-1|AAP97319.1| 392|Homo sapiens unknown protein. 33 1.7
AF428258-1|AAP97298.1| 828|Homo sapiens hypothetical protein pr... 33 1.7
AF057061-1|AAC62617.1| 265|Homo sapiens metalloprotease mmp21/2... 31 5.1
AF055334-2|AAC63528.1| 266|Homo sapiens metalloprotease isoform... 31 5.1
BC066592-1|AAH66592.1| 1516|Homo sapiens CUTL1 protein protein. 31 6.7
>DQ356012-1|ABC86955.1| 818|Homo sapiens ZNF438 transcript variant
3 protein.
Length = 818
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 386 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 499
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 729
>DQ356011-1|ABC86954.1| 818|Homo sapiens ZNF438 transcript variant
2 protein.
Length = 818
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 386 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 499
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 729
>BC104757-1|AAI04758.1| 828|Homo sapiens zinc finger protein 438
protein.
Length = 828
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 386 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 499
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739
>BC101622-1|AAI01623.1| 828|Homo sapiens ZNF438 transcript variant
3 protein.
Length = 828
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 386 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 499
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739
>AL359532-3|CAM17193.1| 828|Homo sapiens zinc finger protein 438
protein.
Length = 828
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 386 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 499
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739
>AL359532-2|CAI13438.1| 818|Homo sapiens zinc finger protein 438
protein.
Length = 818
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 386 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 499
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 729
>AL359532-1|CAI13437.1| 392|Homo sapiens zinc finger protein 438
protein.
Length = 392
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 386 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 499
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 268 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 303
>AK131357-1|BAD18510.1| 779|Homo sapiens protein ( Homo sapiens
cDNA FLJ16387 fis, clone TRACH2007483, weakly similar
to GASTRULA ZINC FINGER PROTEIN XLCGF7.1. ).
Length = 779
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 386 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 499
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 655 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 690
>AF440405-1|AAP97319.1| 392|Homo sapiens unknown protein.
Length = 392
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 386 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 499
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 268 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 303
>AF428258-1|AAP97298.1| 828|Homo sapiens hypothetical protein
protein.
Length = 828
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 386 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 499
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739
>AF057061-1|AAC62617.1| 265|Homo sapiens metalloprotease mmp21/22B
protein.
Length = 265
Score = 31.1 bits (67), Expect = 5.1
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 626 LPYCSKK*TGSKAPSCPPRPSHINFEEKAACHRGPLVRMMWKQGSRPSSSLLP 784
L +C TG A + P I+F++ GP R WK+G RP SS P
Sbjct: 9 LHHCFDGPTGELAHAFFPPHGGIHFDDSEYWVLGP-TRYSWKKGDRPGSSWRP 60
>AF055334-2|AAC63528.1| 266|Homo sapiens metalloprotease isoform B
protein.
Length = 266
Score = 31.1 bits (67), Expect = 5.1
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 626 LPYCSKK*TGSKAPSCPPRPSHINFEEKAACHRGPLVRMMWKQGSRPSSSLLP 784
L +C TG A + P I+F++ GP R WK+G RP SS P
Sbjct: 9 LHHCFDGPTGELAHAFFPPHGGIHFDDSEYWVLGP-TRYSWKKGDRPGSSWRP 60
>BC066592-1|AAH66592.1| 1516|Homo sapiens CUTL1 protein protein.
Length = 1516
Score = 30.7 bits (66), Expect = 6.7
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +1
Query: 598 GTQDPAESASTILLKK---INGK*STV-VPTSTFTY*FRRKGCMSPGSTRKDDVEAGQPS 765
GTQD A+ +LL+K + + + + + S + RRKG P S R + A PS
Sbjct: 384 GTQDAAKPLEVLLLEKNRSLQSENAALRISNSDLSGSARRKGKDQPESRRPGSLPAPPPS 443
Query: 766 QLQSAPTMRGCTTCG 810
QL P + T G
Sbjct: 444 QLPRNPGEQASNTNG 458
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,251,248
Number of Sequences: 237096
Number of extensions: 2941142
Number of successful extensions: 7003
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7002
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10315140830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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