Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d20
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical...    28   7.1  
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
 Frame = -1

Query: 304  CYVTEGDLVDASSDVAG------RDMLLLRDE---AVEDASPSGTAVLPNPGNPRPRASA 152
            C +TE   VD   DV G      RD+L ++DE   ++ED  P      P   +P P A+ 
Sbjct: 1670 CDITEESSVDEKKDVCGRLHEQIRDLLAIKDEVAWSMEDTPPES----PVSRSPEPEATV 1725

Query: 151  KTIK 140
              ++
Sbjct: 1726 GAVQ 1729


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
 Frame = -1

Query: 304  CYVTEGDLVDASSDVAG------RDMLLLRDE---AVEDASPSGTAVLPNPGNPRPRASA 152
            C +TE   VD   DV G      RD+L ++DE   ++ED  P      P   +P P A+ 
Sbjct: 1670 CDITEESSVDEKKDVCGRLHEQIRDLLAIKDEVAWSMEDTPPES----PVSRSPEPEATV 1725

Query: 151  KTIK 140
              ++
Sbjct: 1726 GAVQ 1729


>AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical
           protein B0238.12 protein.
          Length = 166

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = -1

Query: 307 FCYVTEGDLVDASSDVAGRDMLLLRDEAVEDASPSGTAVLPNPGNPRPRASAKTIKTIPR 128
           + Y  +  ++     V G   L  R    E+    GTA  P+  NP P  + + I  + +
Sbjct: 14  YVYAQDAQILPVGGQVGGGQRLPCRGRN-EEYKTCGTACEPSCTNPNPMCTKQCINNVCQ 72

Query: 127 C 125
           C
Sbjct: 73  C 73


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical
           protein W05B2.4 protein.
          Length = 2265

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 534 CCRQYSPIQILNITDTTQLNSRD--ARSGRIRIYHTAQKNKREVKHRRAHL 680
           C  +Y+ I+  N+ D  Q   +D  AR  +I  YH   KN RE+  R   L
Sbjct: 141 CAERYALIE--NVADGYQKRVKDELARLNKIEKYHHHVKNNREILLRSQSL 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,801,616
Number of Sequences: 27780
Number of extensions: 443456
Number of successful extensions: 1206
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)