Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10d19
(798 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 375 e-103
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 349 4e-95
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 307 3e-82
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 269 6e-71
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 232 7e-60
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 226 4e-58
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 206 4e-52
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 204 3e-51
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 196 5e-49
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 192 9e-48
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 171 1e-41
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 151 1e-35
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 145 1e-33
UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal ... 129 7e-29
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 125 1e-27
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 122 8e-27
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 122 8e-27
UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2; Euryar... 97 5e-19
UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960... 91 4e-17
UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2; enviro... 89 9e-17
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 89 2e-16
UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4; Pyroba... 87 5e-16
UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1; Methan... 87 5e-16
UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1; Archae... 84 3e-15
UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12; Archa... 79 2e-13
UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2; Halorubrum... 74 5e-12
UniRef50_A1RXX5 Cluster: Ribosomal protein S3Ae; n=1; Thermofilu... 72 1e-11
UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1; Metallosph... 71 3e-11
UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4; Haloba... 71 3e-11
UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6; Methan... 70 8e-11
UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n... 68 3e-10
UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured... 64 3e-09
UniRef50_A7IAJ1 Cluster: Ribosomal protein S3Ae; n=1; Candidatus... 64 3e-09
UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1; Methanocor... 63 7e-09
UniRef50_A3H9G4 Cluster: Ribosomal protein S3Ae; n=1; Caldivirga... 60 5e-08
UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiell... 60 6e-08
UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S r... 58 3e-07
UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 58 3e-07
UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 56 1e-06
UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2; Thermoprot... 55 2e-06
UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole geno... 52 2e-05
UniRef50_Q74N14 Cluster: 30S ribosomal protein S3Ae; n=2; Nanoar... 39 0.17
UniRef50_Q87BL9 Cluster: DNA helicase; n=5; Xylella fastidiosa|R... 34 3.6
UniRef50_A6FVI8 Cluster: Surface repeat protein, putative; n=2; ... 34 3.6
UniRef50_Q4SVA9 Cluster: Chromosome undetermined SCAF13769, whol... 34 4.8
UniRef50_Q4P2U9 Cluster: Putative uncharacterized protein; n=1; ... 33 6.3
UniRef50_Q751J3 Cluster: Serine/threonine-protein kinase TEL1; n... 33 6.3
UniRef50_Q119K9 Cluster: Putative uncharacterized protein precur... 33 8.3
UniRef50_A0YI31 Cluster: DNA mismatch repair protein; n=5; Cyano... 33 8.3
UniRef50_Q7R086 Cluster: GLP_56_8972_10474; n=1; Giardia lamblia... 33 8.3
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 375 bits (922), Expect = e-103
Identities = 181/260 (69%), Positives = 210/260 (80%), Gaps = 6/260 (2%)
Frame = -2
Query: 764 GKIKACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK 585
GK K + KKG KKK+VDPFTRKDWYDVKAP+MF RQVG TLVNRTQGTKIAS+GLK
Sbjct: 4 GKNKGVSKGGKKGSKKKVVDPFTRKDWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGLK 63
Query: 584 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 405
GRVFEVSLADLQ + DAERSFRKF+L+AE V GR+VL NFHGM LTTDKLR MVKKWQTL
Sbjct: 64 GRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKWQTL 123
Query: 404 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 225
IE ++DVKTTDG++LRVFCIGFT KDS+SQRKTCYAQH+Q++ IR KM II R++T+++
Sbjct: 124 IECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTD 183
Query: 224 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXX 45
L+ VV KL+PDSIAKDIEKAC +YPL DV IRKVKVLK+PRF++S LMELH
Sbjct: 184 LKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGDGGGKAA 243
Query: 44 XXGDKS------ERPEGYEP 3
+ +RPEGYEP
Sbjct: 244 EVSTGAASGVVVDRPEGYEP 263
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 349 bits (859), Expect = 4e-95
Identities = 172/258 (66%), Positives = 202/258 (78%), Gaps = 4/258 (1%)
Frame = -2
Query: 764 GKIKACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK 585
GK K + KKG KKK+VDPF++KDWYDVKAP+MF+ R +G TLV RTQGTKIAS+GLK
Sbjct: 4 GKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLK 63
Query: 584 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 405
GRVFEVSLADLQ D E +FRKF+LI E VQG+N L NFHGMDLT DK+ MVKKWQT+
Sbjct: 64 GRVFEVSLADLQND---EVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTM 120
Query: 404 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 225
IEA++DVKTTDGY+LR+FC+GFT K + RKT YAQH QVR IRKKM EI+TR+V ++
Sbjct: 121 IEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTND 180
Query: 224 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXX 45
L+EVVNKLIPDSI KDIEKAC IYPL DV +RKVK+LK+P+FE+ KLMELH
Sbjct: 181 LKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGK 240
Query: 44 XXGD----KSERPEGYEP 3
GD K ER +GYEP
Sbjct: 241 ATGDETGAKVERADGYEP 258
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun sequence
- Vitis vinifera (Grape)
Length = 656
Score = 307 bits (753), Expect = 3e-82
Identities = 149/232 (64%), Positives = 182/232 (78%)
Frame = -2
Query: 764 GKIKACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK 585
GK K + KKG KKK DPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK
Sbjct: 399 GKNKRISKG-KKGGKKKAADPFAKKDWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLK 457
Query: 584 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 405
RVFE+SLADLQAD D +++RK RL AE VQGRNVL NF GMD TTDKLR +V+KWQTL
Sbjct: 458 HRVFEISLADLQADED--QAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTL 515
Query: 404 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 225
IEA++DVKTTD Y LR+FCI FT K +KTCYAQ +Q+R IR+KM EI+T T+ +
Sbjct: 516 IEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCD 575
Query: 224 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 69
L+E+V K IP+SI ++IEKA IYPL++V IRKVK+LK P+F++ KLME+H
Sbjct: 576 LKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVH 627
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 269 bits (659), Expect = 6e-71
Identities = 130/232 (56%), Positives = 172/232 (74%)
Frame = -2
Query: 764 GKIKACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK 585
GK K + KKG+KKK DPF RKDWY +KAP+ F+ R VG TLVNR+ G K A++ LK
Sbjct: 4 GKNKRLSKG-KKGLKKKTQDPFARKDWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDALK 62
Query: 584 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 405
GR+FEVSLADLQ D D +FRK +L + VQG+N L NFHG+D T+DKLR +V+KWQ+L
Sbjct: 63 GRIFEVSLADLQKDED--HAFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSL 120
Query: 404 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 225
IEAN+ VKTTD Y+LR+F I T + +KT YA +Q+RAIR+KM EII R+ +
Sbjct: 121 IEANVTVKTTDDYLLRLFAIAVTKRRPNQIKKTTYAASSQIRAIRRKMTEIIQREASTCT 180
Query: 224 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 69
L+++ NKLIP+ I ++IEKA GIYPL++V IRKVK+LK+P+F++ L+ LH
Sbjct: 181 LQQLTNKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGGLLALH 232
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 232 bits (568), Expect = 7e-60
Identities = 128/242 (52%), Positives = 169/242 (69%), Gaps = 20/242 (8%)
Frame = -2
Query: 734 KKGVKK--KIVDPFTRKDWYDVKAPSMFSK----RQVGTTLVNRTQGTKIASEGLKGRVF 573
KKG KK K VDPFTRK+WY V+AP+ F K +VG T VNRTQGTK+AS+GLKGRV+
Sbjct: 6 KKGSKKGGKKVDPFTRKEWYVVRAPTQFFKSPADNKVGFTPVNRTQGTKLASDGLKGRVY 65
Query: 572 EVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEAN 393
EVSLAD++ D + FRK +L AE V+GRNVL NF+GMDLT+DKLR ++ KW TLIE
Sbjct: 66 EVSLADMK--DDESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSLIHKWSTLIECF 123
Query: 392 IDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREV 213
+DVKTTDGY LRVF I FT K ++KT YA+ ++V+AIRKKM +I+T V++++L+ V
Sbjct: 124 VDVKTTDGYFLRVFAICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTV 183
Query: 212 VNKLI--------------PDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLME 75
V+ LI ++A+ I I+P+ +V IRKVKVLK P+ + +KL E
Sbjct: 184 VDYLIGVSLNGVTTNASGFAPTLAEKIRIEGSSIFPIHNVFIRKVKVLKTPKVDAAKLSE 243
Query: 74 LH 69
L+
Sbjct: 244 LY 245
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 226 bits (553), Expect = 4e-58
Identities = 107/225 (47%), Positives = 153/225 (68%), Gaps = 3/225 (1%)
Frame = -2
Query: 734 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 555
KKG KK+ +DP +RK+WYD +AP FS + G TLV ++ G +IASE +KGRV E +LAD
Sbjct: 15 KKGAKKRTIDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLAD 74
Query: 554 LQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTT 375
L+ D ++++RK +L+ + V GRN +F+G+D+T D+L M++KWQTLIEA +D KT
Sbjct: 75 LK-DNSNDKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTN 133
Query: 374 DGYVLRVFCIGFTNKDSL---SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 204
DGY++RVF + FT K S S TCYA+ +QVRAIR+K+ IT + + E
Sbjct: 134 DGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKN 193
Query: 203 LIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 69
LI + K IEK I+PL+++ IRKVKVLKRP+ + +K+ EL+
Sbjct: 194 LIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELY 238
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 206 bits (504), Expect = 4e-52
Identities = 92/232 (39%), Positives = 150/232 (64%)
Frame = -2
Query: 764 GKIKACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK 585
GK K + K+G + K + RK+WYDV AP+ F KRQ T+ N+TQGT+IA++ L+
Sbjct: 4 GKNKRISKGGKRGKRGKAQETMARKEWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLR 63
Query: 584 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 405
GRVFE +LADL E ++RK R + VQGRN+L FH M++TTDK+ +++KW T
Sbjct: 64 GRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMANLLRKWCTT 123
Query: 404 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 225
+E ++VKT DGY +R+F + FT + Q + CYA+ V+ +R ++ ++I R ++ +
Sbjct: 124 METTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQ 183
Query: 224 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 69
++E V+ L + ++ + + C+ I PLR++ IRKV+V++ P+F+ L+ H
Sbjct: 184 IKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAH 235
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 204 bits (497), Expect = 3e-51
Identities = 95/222 (42%), Positives = 151/222 (68%)
Frame = -2
Query: 734 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 555
KKG +KK +DP RK+W+++ AP F+ G T +N++ GT +A+E +KGRV E SLAD
Sbjct: 12 KKG-QKKTIDPLARKEWFELTAPVPFAAGGFGYTCINKSAGTVVATEAIKGRVVEASLAD 70
Query: 554 LQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTT 375
LQ +D + ++RK +LI + V+G +F+G+D T DK+ M+KK QTLIE ++ ++
Sbjct: 71 LQGQSD-QMAWRKVKLIIDDVEGTRCRTSFYGLDSTKDKIFGMIKKRQTLIETQVEARSQ 129
Query: 374 DGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIP 195
DGY+LR+F I FT QRKT YAQ +Q++ IRKK+ EI+ ++V+ + +++
Sbjct: 130 DGYILRIFVIAFTKSIKNQQRKTTYAQRSQIKDIRKKIVEIVLKEVSKKSITQLLGFFNQ 189
Query: 194 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 69
+S+AK+I KA I+PL+++ +RKVK++KRP+ + KL E +
Sbjct: 190 ESLAKEIGKATRTIFPLQNITLRKVKLVKRPKVDAQKLREFY 231
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 196 bits (478), Expect = 5e-49
Identities = 109/238 (45%), Positives = 149/238 (62%), Gaps = 1/238 (0%)
Frame = -2
Query: 728 GVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 549
G ++K +KD YDVKA +MF+ R +G T V R Q TK+ S GL G VFE SLA LQ
Sbjct: 1 GARRKTARRAKKKDRYDVKALTMFNVRNIGKTQVLRKQETKMVSVGLNGLVFEASLASLQ 60
Query: 548 ADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDG 369
D RKF+LI E ++G+N L N +GMDLT DK V KWQ ++EA+ DVKT D
Sbjct: 61 NDKVV---VRKFKLITEDMRGKNGLTNSYGMDLTWDKRCNKVIKWQ-MVEAHADVKTADY 116
Query: 368 YVLRVFCIGFT-NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPD 192
Y+L +FC+G+T N + R+ AQ+ QV I +I+ D ++L+EV+NKL+PD
Sbjct: 117 YLLCLFCVGYTTNVTTRYARQLVCAQYQQVHQIWLITIQIM--DQRRTDLKEVLNKLVPD 174
Query: 191 SIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKSERP 18
++ KD+EKAC IYPL DV +RKVK+L++P+ ++ KL ELH D+ E P
Sbjct: 175 NVGKDVEKACQFIYPLHDVFVRKVKILQKPKLDLGKLPELHALGLHGSHRKSDRYEPP 232
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 192 bits (468), Expect = 9e-48
Identities = 97/199 (48%), Positives = 136/199 (68%), Gaps = 1/199 (0%)
Frame = -2
Query: 767 SGKIKACRRA-VKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEG 591
+GK K + VKKG K+KI +PF++K+WY+VK P F +R VG +VN+T GT+IASE
Sbjct: 3 TGKNKKYKAGNVKKGSKRKIAEPFSKKEWYNVKVPKNFKRRTVGQIVVNKTAGTRIASEQ 62
Query: 590 LKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 411
LKGRV EV+LADL + KF+ E V G++ L FHG+ LTTDKLR +VKKW
Sbjct: 63 LKGRVVEVNLADLMENEKFGAYNYKFK--CEDVNGKDCLMIFHGLKLTTDKLRSIVKKWC 120
Query: 410 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTN 231
TLIE ++DVKTTDG+++R+FCIGFT++ S +KT YA+ Q++ IRK M +IT++ +
Sbjct: 121 TLIETSVDVKTTDGHLIRIFCIGFTSRKSNQIKKTSYAKSAQIKKIRKIMNNLITKEAAS 180
Query: 230 SELREVVNKLIPDSIAKDI 174
EL + V+ L + K +
Sbjct: 181 RELTQFVDYLKKTNFQKKL 199
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 171 bits (417), Expect = 1e-41
Identities = 85/174 (48%), Positives = 114/174 (65%)
Frame = -2
Query: 524 FRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 345
FRKF+L E VQGR+ L NFHGMDLT DKL MV KWQ+ IEA++DVKTTDGY LR F I
Sbjct: 7 FRKFKLQVEDVQGRHCLTNFHGMDLTHDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVI 66
Query: 344 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKA 165
FT K Q+ YAQ T+++ +R ++ E++ R+V +L+ VV KLIPDSI +D
Sbjct: 67 AFTKKQE-DQKSHAYAQTTRIKKLRAEIVEVVQREVARCDLKSVVQKLIPDSIGQDAMNE 125
Query: 164 CHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKSERPEGYEP 3
I+PL +RKVKVLK+P+ ++ +++ELH G+ RP+ YEP
Sbjct: 126 ASSIFPLSGALVRKVKVLKKPKLDLGRILELH--SEGKADEFGEGVPRPDHYEP 177
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 151 bits (367), Expect = 1e-35
Identities = 79/222 (35%), Positives = 123/222 (55%)
Frame = -2
Query: 734 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 555
KK ++K DP+ +K+WY V AP+ F R +G T V +T G ++A++ + RV+EV+L D
Sbjct: 11 KKITQRKNPDPYLKKEWYPVIAPAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGD 70
Query: 554 LQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTT 375
L + KF L + V L NFHGMD+T K + +K I+ +D+ TT
Sbjct: 71 LNPGAEDLNGNTKFYLQTQLVSDGKCLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTT 130
Query: 374 DGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIP 195
DGY+LRVF I FT++ +RK C+ + +R +R + E + ++ + +V KL
Sbjct: 131 DGYLLRVFVIAFTDRFRFQRRKNCHVKGRVIRMMRAGIYETLHNELGKVSIPVLVTKLSN 190
Query: 194 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 69
+ + +A I RDV IR+VKV+KRPR + L +H
Sbjct: 191 FEVNAKLTEALQKITMCRDVMIRRVKVVKRPRNTMELLSTMH 232
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 145 bits (351), Expect = 1e-33
Identities = 76/130 (58%), Positives = 94/130 (72%)
Frame = -2
Query: 761 KIKACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKG 582
K K + KKG KKK+VDPF++KDWYDV AP+MF+ R +G TLV RTQGTKIAS+ G
Sbjct: 5 KNKRLTKGGKKGAKKKVVDPFSKKDWYDVNAPAMFNIRNIGKTLVTRTQGTKIASD---G 61
Query: 581 RVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLI 402
RVFEVSLADLQ D E +FRKF+LI E VQG+N L NFHG+DLT+DK+ ++K I
Sbjct: 62 RVFEVSLADLQND---EVAFRKFKLITEDVQGKNCLTNFHGVDLTSDKITSQIRKKMMEI 118
Query: 401 EANIDVKTTD 372
+V+T D
Sbjct: 119 MTR-EVQTND 127
Score = 114 bits (274), Expect = 3e-24
Identities = 57/94 (60%), Positives = 69/94 (73%), Gaps = 4/94 (4%)
Frame = -2
Query: 275 IRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRF 96
IRKKM EI+TR+V ++L+EVVNKLIPDSI KD+EKAC IYPL DV +RKVK+LK+P+F
Sbjct: 111 IRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDVEKACQSIYPLHDVFVRKVKMLKKPKF 170
Query: 95 EISKLMELHXXXXXXXXXXGD----KSERPEGYE 6
E+ KLMELH GD K ER +GYE
Sbjct: 171 ELGKLMELHGEGCSSGKATGDETGVKVERADGYE 204
>UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal
protein S3a; n=1; Equus caballus|Rep: PREDICTED: similar
to ribosomal protein S3a - Equus caballus
Length = 153
Score = 129 bits (312), Expect = 7e-29
Identities = 64/101 (63%), Positives = 77/101 (76%)
Frame = -2
Query: 743 RAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVS 564
R+ KKG KKK VD ++KDWYD+KAP+MF+ R +G TLV RTQGTKIAS+GLKG VFE+S
Sbjct: 11 RSSKKGAKKKAVDQISKKDWYDMKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGGVFEMS 70
Query: 563 LADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTD 441
LADLQ D E +FRKF+LI E VQG+ L NF M L+ D
Sbjct: 71 LADLQND---EVAFRKFKLITEDVQGKRCLINFRSMGLSCD 108
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 125 bits (301), Expect = 1e-27
Identities = 72/218 (33%), Positives = 117/218 (53%), Gaps = 1/218 (0%)
Frame = -2
Query: 752 ACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFS-KRQVGTTLVNRTQGTKIASEGLKGRV 576
A ++ K KK D F +K+W V P+ F+ KR +G T+ N+ ++ + + RV
Sbjct: 3 ASKQQRPKTSKKIKQDSFIKKEWRHVLVPAYFTGKRDIGVTVSNKCARGRVPMDYVNNRV 62
Query: 575 FEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEA 396
+E+S AD+ D +R IA G V F GM LT DKL +++K++T+I+A
Sbjct: 63 WELSHADMVNDLSHAYRLFSWRSIAA---GSEVYTQFAGMRLTHDKLDSIMRKYRTMIDA 119
Query: 395 NIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE 216
++D KT DG++LR+F IGFT K + S + YA + R +R M + +T + + +
Sbjct: 120 SVDAKTADGFILRLFTIGFTKKLANSHKNHTYANSHKARQVRDVMIKALTDACEANGVEQ 179
Query: 215 VVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 102
+ + + I +I + C I + V I KVKV+K P
Sbjct: 180 LCKDFVDEKIENEIVEKCKQICQIESVYITKVKVIKAP 217
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 122 bits (295), Expect = 8e-27
Identities = 64/204 (31%), Positives = 113/204 (55%)
Frame = -2
Query: 719 KKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADT 540
KK D +R++ V AP +F + +G TL+ + + + ++++VSLAD+
Sbjct: 15 KKNQDVNSRQELIKVYAPDIFDSKLIGKTLIKKRNPAD-ENSSVDNKIYQVSLADILGKE 73
Query: 539 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 360
E S F + + FHG+ LT DK+ ++KKW TLIE ++ KT DGY L
Sbjct: 74 --EFSSINFNFKSLKIFNNECFTKFHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDGYFL 131
Query: 359 RVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 180
++F I + K + KT Y +Q RA+R+++ +II ++ N ++++ ++++ I +
Sbjct: 132 KLFLIAQSKKPKNMKSKTVYINSSQKRALRRRITDIIIKEGINMDIKDFIHRIYSLKIYE 191
Query: 179 DIEKACHGIYPLRDVCIRKVKVLK 108
IE C I+P+ V IRK+KV++
Sbjct: 192 KIEINCSKIFPIHQVNIRKIKVVE 215
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 122 bits (295), Expect = 8e-27
Identities = 60/159 (37%), Positives = 98/159 (61%)
Frame = -2
Query: 584 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 405
GR ++V+ ADL + D RKF ++G + F GM+LT+DK + M+KKW TL
Sbjct: 15 GRRYDVNQADLTGNNDV--GHRKFIFKIGDIKGSECVGFFDGMELTSDKHKAMIKKWHTL 72
Query: 404 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 225
IEA D+ DG V RVF +G T + +KTCY +H+ + IRK M ++I +++ +
Sbjct: 73 IEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKKTCYVKHSDEKKIRKIMFDVIEEELSGCD 132
Query: 224 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 108
+++++ KL +++ K IE+ I+PL++ C+RKVK +K
Sbjct: 133 VQKIMKKLANETVGKRIEELGSEIFPLQNCCVRKVKTIK 171
>UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S3AE -
Uncultured methanogenic archaeon RC-I
Length = 225
Score = 97.1 bits (231), Expect = 5e-19
Identities = 68/211 (32%), Positives = 108/211 (51%)
Frame = -2
Query: 716 KIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 537
K VD F K+WY V AP+ F++ +G TL + G I GRV E +L D+ D
Sbjct: 7 KKVDAFRAKNWYQVIAPAEFNRANIGETLAD-DPGKMI------GRVMESTLGDVTGDWT 59
Query: 536 AERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLR 357
+ FR+ E + G + +F G +LT D +R +VK+ + I+AN+ V T DG+ +R
Sbjct: 60 KQNIKMIFRI--EEIGGNSAYTSFLGHELTRDYMRSLVKRRTSKIDANVVVTTKDGFKVR 117
Query: 356 VFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKD 177
V I T K A+ +Q+ +IR+ M ++ + E +N+++ +A +
Sbjct: 118 VKPIVLTVK---------RARTSQIESIRQIMINVVNKRGAELGFTEFINEVVTGKVASE 168
Query: 176 IEKACHGIYPLRDVCIRKVKVLKRPRFEISK 84
I K IYPLR V I K +++ RP +K
Sbjct: 169 IYKNTKNIYPLRRVEIGKSELVYRPAVAAAK 199
>UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960;
n=40; Coelomata|Rep: Uncharacterized protein
ENSP00000341960 - Homo sapiens (Human)
Length = 79
Score = 90.6 bits (215), Expect = 4e-17
Identities = 46/73 (63%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Frame = -2
Query: 209 NKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGD- 33
NKLIPDSI KDIEKAC IYPL DV +RKVK+LK+P+FE+ KLMELH GD
Sbjct: 1 NKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGDSSSSGKAIGDE 60
Query: 32 ---KSERPEGYEP 3
K ER EGYEP
Sbjct: 61 TGAKVERAEGYEP 73
>UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2;
environmental samples|Rep: SSU ribosomal protein S3AE -
uncultured euryarchaeote Alv-FOS1
Length = 227
Score = 89.4 bits (212), Expect = 9e-17
Identities = 65/218 (29%), Positives = 106/218 (48%)
Frame = -2
Query: 731 KGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADL 552
+ +K+ D + K WY + P FS +++G T + K+ GRV E +L DL
Sbjct: 7 RAASRKVRDKWRSKVWYTIITPETFSSKEIGMTPADDPD--KVI-----GRVAESTLYDL 59
Query: 551 QADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTD 372
+ F++ VQG N F G D+TTD +R M+++ ++ I+ +V+T+D
Sbjct: 60 SGNFKKMHVKLYFKI--NRVQGTNAYTRFIGHDMTTDYIRRMIRRRRSRIDMIFNVETSD 117
Query: 371 GYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPD 192
GY +RV + ++ S KT IRKK+ E +T E V +I D
Sbjct: 118 GYRMRVKVLTVPDRRIKSSIKT---------EIRKKIQEYLTEKARAMTFSEYVKYIISD 168
Query: 191 SIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 78
+++ K IYP+R + IRK +VL P +I +L+
Sbjct: 169 DAPRELSKELKVIYPVRRIEIRKSEVLHFPEEKIVELV 206
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 88.6 bits (210), Expect = 2e-16
Identities = 65/211 (30%), Positives = 111/211 (52%)
Frame = -2
Query: 734 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 555
+K V++K+ D + K+WY+++AP+ ++ VGTT+ L GR E ++ +
Sbjct: 3 RKKVQRKL-DGWKSKEWYNIEAPAYLNRVIVGTTMAGDPSL-------LVGRNVETTVGE 54
Query: 554 LQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTT 375
L D ++ K L V G + G +LTTD +R +VK+ + I+AN+DV+T
Sbjct: 55 LT--NDMTKNNTKVILRVNNVVGDIATTDLMGHELTTDYVRSIVKRQTSRIDANVDVRTK 112
Query: 374 DGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIP 195
DG+V+RV FT K A+ +Q++AIR+ M +I+ + + ++ + + I
Sbjct: 113 DGFVIRVKPTCFTIK---------RARSSQMQAIREMMVDIVKKRASETDFETFMQEAIL 163
Query: 194 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 102
++ I + IYPLR V IRK +V P
Sbjct: 164 GRLSAAIYRQAKFIYPLRRVEIRKTQVEAMP 194
>UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S3Ae -
Pyrobaculum aerophilum
Length = 221
Score = 87.0 bits (206), Expect = 5e-16
Identities = 66/220 (30%), Positives = 104/220 (47%)
Frame = -2
Query: 761 KIKACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKG 582
K KA + K + K+ DP+ K W+ V APS + N Q L
Sbjct: 4 KQKAVAKQEKVAISKR--DPWALKKWFSVYAPSYLGGVFLAEVPANEAQK-------LLM 54
Query: 581 RVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLI 402
R EVSL D+ D KF++ V+G L F G++LT D +R +V+K + +
Sbjct: 55 RTLEVSLYDITKDISHLPIKLKFQI--HRVEGLKALTRFKGLELTRDYIRSLVRKGTSKV 112
Query: 401 EANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSEL 222
A +VKT DG V+R+ +G T + +K+ A+RKKM E + + +
Sbjct: 113 TAITEVKTKDGMVMRIAVLGITTHRIGTAQKS---------AMRKKMIETLVKKAAELDS 163
Query: 221 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 102
+ + +++ ++A D+ I P+R V I K+KVLK P
Sbjct: 164 GQFLKEILEGTLAADLFIVAKKIAPMRKVEIAKIKVLKYP 203
>UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3Ae -
Methanopyrus kandleri
Length = 211
Score = 87.0 bits (206), Expect = 5e-16
Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 4/206 (1%)
Frame = -2
Query: 707 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 528
D + K WY + AP MF +VG T + E + GRV E +L D+ D
Sbjct: 4 DKWKDKVWYTILAPDMFDNVEVGETPADDP-------EKVIGRVLETTLGDVLDDITKHH 56
Query: 527 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 348
FR+ V+G F G L D +R +V++ + I+ IDV T DGY +RV
Sbjct: 57 IKVFFRIYD--VEGTTAYSKFEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAG 114
Query: 347 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLI----PDSIAK 180
+ FT T A+ +Q RAIRK+M ++I + + E + + + +SI +
Sbjct: 115 LAFT---------TRRAKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPE 165
Query: 179 DIEKACHGIYPLRDVCIRKVKVLKRP 102
I++A IYP+R IRK +VL+ P
Sbjct: 166 QIKEAGRKIYPIRQAEIRKTEVLEEP 191
>UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3Ae -
Archaeoglobus fulgidus
Length = 211
Score = 84.2 bits (199), Expect = 3e-15
Identities = 59/205 (28%), Positives = 100/205 (48%)
Frame = -2
Query: 716 KIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 537
++ D +T K W+ + AP F ++G T + +K+ GR E +LA+L D
Sbjct: 9 RVKDKWTLKKWFTLIAPEYFGMAELGETPAD--DASKVV-----GRTVETTLAELTNDYS 61
Query: 536 AERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLR 357
+ +++K V G N F +LT + L + ++ + IE +DV T DGY LR
Sbjct: 62 NQNTYKKLIFKVYRVAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLR 121
Query: 356 VFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKD 177
V + FT + + KT +Q RAIR M +I+ ++ + + + + + +
Sbjct: 122 VKSVVFT----VRRCKT-----SQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAE 172
Query: 176 IEKACHGIYPLRDVCIRKVKVLKRP 102
I K IYP+R V IRK+++L P
Sbjct: 173 IYKNAKKIYPIRRVEIRKIELLAEP 197
>UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12;
Archaea|Rep: 30S ribosomal protein S3Ae - Aeropyrum
pernix
Length = 214
Score = 78.6 bits (185), Expect = 2e-13
Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 4/212 (1%)
Frame = -2
Query: 725 VKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQA 546
V+ I D + K W+ V AP +F + +GTT + + L GRV E +L D+
Sbjct: 2 VRGGIRDTWRLKKWFKVVAPPLFGETVLGTTPADDP-------DKLIGRVMETTLFDITG 54
Query: 545 DTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGY 366
D F+++ V+G F G +L D +R + ++ + + +V T DGY
Sbjct: 55 DYSYVHVKMYFQVVR--VEGDTAYTRFKGHELLRDYIRGLTRRKSSKVTGIFNVWTKDGY 112
Query: 365 VLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLI---- 198
LRV + FT R+ C + +Q AIRK M EI+ + S L E++ ++
Sbjct: 113 GLRVTAMAFT-------RQRC--KTSQKSAIRKVMQEIVEQKARESTLDELIQLMVFSDH 163
Query: 197 PDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 102
S+A I+++ IYPLR V I K K+L P
Sbjct: 164 EGSLAYLIDESARKIYPLRKVEIAKSKLLWVP 195
>UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2;
Halorubrum|Rep: Ribosomal protein S3Ae - Halorubrum
lacusprofundi ATCC 49239
Length = 215
Score = 73.7 bits (173), Expect = 5e-12
Identities = 55/198 (27%), Positives = 92/198 (46%)
Frame = -2
Query: 695 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 516
+K WY V AP F ++++G TL + + GR +L +L D+ A +
Sbjct: 12 QKRWYSVLAPEQFDRQELGETLAEEP-------DQVVGRTITTTLGELTGDSGANNTKLT 64
Query: 515 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 336
F++ V F +LT D LR +V++ + +EA+I V TTD Y +RV + T
Sbjct: 65 FKITD--VGSDTAYTEFIKYELTRDYLRSLVRRGASKVEASITVLTTDDYRIRVQPVALT 122
Query: 335 NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHG 156
K A +Q +AIR+ M + + + V+ ++ +++ I
Sbjct: 123 TKK---------ADRSQEKAIRRVMIDKVHAAAEDRTFESFVDAIVEGNLSSAIYGDAKL 173
Query: 155 IYPLRDVCIRKVKVLKRP 102
IYPLR V I+K+ + RP
Sbjct: 174 IYPLRRVEIQKLTLEARP 191
>UniRef50_A1RXX5 Cluster: Ribosomal protein S3Ae; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein S3Ae - Thermofilum
pendens (strain Hrk 5)
Length = 207
Score = 72.1 bits (169), Expect = 1e-11
Identities = 58/211 (27%), Positives = 102/211 (48%)
Frame = -2
Query: 722 KKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQAD 543
+ K D ++ K W V AP F +G L+ + K GR EVS D+ D
Sbjct: 4 RAKTKDKWSMKKWIKVLAPKAFGFANLG--LIPADEPEKAL-----GRTVEVSFYDITKD 56
Query: 542 TDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYV 363
KF+++ V L M++T D +R +V++ + ++A +DV+T DG
Sbjct: 57 VSQLHIKLKFQIVK--VDDGIALTQLKLMEMTRDYIRSLVRRGTSRVDAILDVQTKDGVK 114
Query: 362 LRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIA 183
+RV + T +S+ KT +Q +AIR+ M +II+ + + + + + ++A
Sbjct: 115 MRVMALAVT----VSRIKT-----SQKKAIRRIMFDIISEKAASLDFDTFIQQAVIGTMA 165
Query: 182 KDIEKACHGIYPLRDVCIRKVKVLKRPRFEI 90
+++ IYP++ V + K+KVL P EI
Sbjct: 166 TEMQMQAKKIYPIKKVEVYKIKVL-TPTTEI 195
>UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S3Ae - Metallosphaera sedula DSM 5348
Length = 216
Score = 71.3 bits (167), Expect = 3e-11
Identities = 58/221 (26%), Positives = 95/221 (42%), Gaps = 1/221 (0%)
Frame = -2
Query: 743 RAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVS 564
R+ KG + D + K W+ + +P +F + +G+T T GR E +
Sbjct: 4 RSGAKGSAGALKDKWKMKKWFSIYSPKVFGEVSLGSTPAFDVSQTM-------GRKVETT 56
Query: 563 LADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDV 384
L DL D F+++ +G + F G +L+ D +R +V++ + I +D+
Sbjct: 57 LYDLTGDFSTVYVHLYFKVVRN--EGERLFTEFAGHELSRDYVRSLVRRKSSKINKVVDI 114
Query: 383 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQH-TQVRAIRKKMCEIITRDVTNSELREVVN 207
T DG+ LRV + T Y H Q IRK M +++ + E V
Sbjct: 115 TTKDGFTLRVKTLAL----------TAYRVHREQATTIRKIMEDVVKKTAEGKTFDEFVQ 164
Query: 206 KLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISK 84
++I ++A +I I PLR I K KVL P + K
Sbjct: 165 EMIFGNLANNIFNEAKKIAPLRKAEIEKSKVLFAPLIKEGK 205
>UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4;
Halobacteriaceae|Rep: 30S ribosomal protein S3Ae -
Haloarcula marismortui (Halobacterium marismortui)
Length = 213
Score = 71.3 bits (167), Expect = 3e-11
Identities = 51/198 (25%), Positives = 90/198 (45%)
Frame = -2
Query: 695 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 516
+K WY V+AP F + +G T + + GR E +L +L D +
Sbjct: 12 QKRWYTVQAPEQFDREVLGKTPAEEP-------DKVLGRTIETTLGELTNDASENNTKLT 64
Query: 515 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 336
F++ V + F +LT D LR +V++ + +EA I V TTD Y +++ + T
Sbjct: 65 FKI--NEVASDSAYTEFIRHELTRDYLRSLVRRGSSKVEAYITVLTTDDYRVQIQPVAVT 122
Query: 335 NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHG 156
K A +Q +AIR+ M +++ + ++++ ++ ++ I
Sbjct: 123 TKK---------ADASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKD 173
Query: 155 IYPLRDVCIRKVKVLKRP 102
IYPLR V I+K + RP
Sbjct: 174 IYPLRRVEIKKTTLEARP 191
>UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6;
Methanococcales|Rep: 30S ribosomal protein S3Ae -
Methanococcus maripaludis
Length = 225
Score = 69.7 bits (163), Expect = 8e-11
Identities = 55/205 (26%), Positives = 92/205 (44%)
Frame = -2
Query: 722 KKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQAD 543
K+ D + K WYD+ P F +G T N L GR+ E+SL DL +
Sbjct: 12 KRVAKDTWKSKVWYDIYTPQSFGGDVIGQTPANDPAN-------LIGRISEISLRDLTNE 64
Query: 542 TDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYV 363
+ F++ + V G N F G D T + L+ V++ ++ I A ++V+T DG+
Sbjct: 65 HSKHMTRMYFKV--DGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVEVRTKDGFK 122
Query: 362 LRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIA 183
+RV + T + KT IR +M +II + E V+ ++ +
Sbjct: 123 VRVKALVLTAVRARDHHKT---------EIRVRMEQIIKEMAKETPFAEFVHAMLMGGLG 173
Query: 182 KDIEKACHGIYPLRDVCIRKVKVLK 108
I C ++PL+ V I K +V++
Sbjct: 174 SKIYGDCKKMFPLKRVEIFKSEVIE 198
>UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n=2;
Methanobacteriaceae|Rep: Small subunit ribosomal protein
S3Ae - Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861)
Length = 193
Score = 67.7 bits (158), Expect = 3e-10
Identities = 51/208 (24%), Positives = 95/208 (45%)
Frame = -2
Query: 734 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 555
K ++++ D + K WY +K P F +++G T + L GR EV++ +
Sbjct: 3 KAKARRRVRDTWKEKSWYTIKTPVNFEDKEIGETPARDP-------DYLIGRGVEVTMRE 55
Query: 554 LQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTT 375
L D + + K R + V G F G TTD +R M+++ + I+A+ VKT
Sbjct: 56 LSGDFS--KQYIKLRFEIDNVAGDVANTKFTGHKTTTDYVRSMIRRGTSRIDASSVVKTK 113
Query: 374 DGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIP 195
D +++ + T T A+ +Q + +R+ + +++ E++ ++
Sbjct: 114 DDRKVKLHVLAVT---------TRRAKSSQQKYMRQVINDLLAETAAEKSFDELIKLVVN 164
Query: 194 DSIAKDIEKACHGIYPLRDVCIRKVKVL 111
+A ++ IYPL+ V I K KVL
Sbjct: 165 GKLASEVYHNAKKIYPLKRVEIIKSKVL 192
>UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured
marine bacterium HF10_29C11|Rep: Ribosomal protein S3AE
- uncultured marine bacterium HF10_29C11
Length = 322
Score = 64.5 bits (150), Expect = 3e-09
Identities = 52/212 (24%), Positives = 102/212 (48%), Gaps = 1/212 (0%)
Frame = -2
Query: 740 AVKKGVKKKIVDPFTRKDWYDVKAPSM-FSKRQVGTTLVNRTQGTKIASEGLKGRVFEVS 564
A + +K D + K WY ++AP ++ + +G T+ + E + GR++E++
Sbjct: 10 AKARAAARKQRDKWKTKRWYTIRAPRHPWNYQNIGETIGE-------SDEHIIGRIYEMT 62
Query: 563 LADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDV 384
+ D +FR ++E V G++ L F G T+ +R +++++ I+ IDV
Sbjct: 63 QQEFNGDFTKMHVMLRFR-VSETV-GQDALTTFVGHHHQTNHIRRQIRRYRGKIDDVIDV 120
Query: 383 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 204
T DGY++R+ + T K Q + ++IR K +++ V + +
Sbjct: 121 VTEDGYLVRIKPLIITQK---------RVQTSVKQSIRAKTRDVLLGYVAKTTYDALQVA 171
Query: 203 LIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 108
++ S+ +I+ IYP R V IRK ++L+
Sbjct: 172 MLDGSLETEIQNQIKTIYPCRSVVIRKSQLLQ 203
>UniRef50_A7IAJ1 Cluster: Ribosomal protein S3Ae; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S3Ae -
Methanoregula boonei (strain 6A8)
Length = 201
Score = 64.5 bits (150), Expect = 3e-09
Identities = 55/207 (26%), Positives = 92/207 (44%)
Frame = -2
Query: 734 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 555
KK + V+ + K W+ V P K +G T+ + E +KGR+ + +L +
Sbjct: 3 KKKQAGRRVEGWKAKSWFKVYTPDNLGKAYIGDTIASEV-------ETVKGRIMQATLGE 55
Query: 554 LQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTT 375
+ D + F+ IAE V G F G ++T D LR +VK+ + I+ ++ V T
Sbjct: 56 ITNDYAKQHIKMSFK-IAE-VTGDAAYTEFVGHEVTRDYLRSLVKRRSSRIDCHVQVVTK 113
Query: 374 DGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIP 195
D +R+ ++S A Q A+R + + +L +VN ++
Sbjct: 114 DNKKVRL---------TISCYTFARANIAQEHALRNAITAGLVAQAQAWDLNTLVNGVVS 164
Query: 194 DSIAKDIEKACHGIYPLRDVCIRKVKV 114
I+KD+ K +YP R V I K KV
Sbjct: 165 GEISKDLFKLVKTLYPTRRVEIIKSKV 191
>UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S3Ae - Methanocorpusculum labreanum (strain ATCC 43576 /
DSM 4855 / Z)
Length = 206
Score = 63.3 bits (147), Expect = 7e-09
Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 1/207 (0%)
Frame = -2
Query: 740 AVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSL 561
A KK + V+ + K+WY V AP K+ +G + + E + GRV VSL
Sbjct: 2 ARKKQSGGRKVEGWKAKNWYKVHAPEFLGKQFIGEIISSNP-------ENVPGRVLTVSL 54
Query: 560 ADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVK 381
+L D + F+++ V G F+G ++T + +R MVKK + +++ I V
Sbjct: 55 GELIQDYSKQNVRASFKIMN--VAGDAAYTQFNGHEMTKEFVRAMVKKRASRVDSTITVT 112
Query: 380 TTDG-YVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 204
L+V FT +A+ +QV+ +R KM +++ ++ V+
Sbjct: 113 PLGSTRELQVTITAFTIN---------HARLSQVQELRAKMVKVVEDSAKEADFESFVSA 163
Query: 203 LIPDSIAKDIEKACHGIYPLRDVCIRK 123
++ ++K + C I+P+R + I K
Sbjct: 164 MLKGELSKKMFAECKPIFPVRRIEIIK 190
>UniRef50_A3H9G4 Cluster: Ribosomal protein S3Ae; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3Ae -
Caldivirga maquilingensis IC-167
Length = 221
Score = 60.5 bits (140), Expect = 5e-08
Identities = 50/162 (30%), Positives = 72/162 (44%)
Frame = -2
Query: 584 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 405
GR E +L DL D +FR+ V L F+GM+LT D +R +V++ +
Sbjct: 50 GRNVETTLYDLTKDLSHINVKLRFRVNG--VDDGRALTQFNGMELTRDYVRNLVRRGSSK 107
Query: 404 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 225
+ DV T DG LR+ + T T T IRK + + + + S+
Sbjct: 108 VMVIKDVTTKDGGKLRMEVLAIT---------TYRCTRTHKHLIRKSIMDRLDKVGQESD 158
Query: 224 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 99
+V I I D+ IYPLR V I K+KVL+ PR
Sbjct: 159 FDSLVRDSIMGKIQVDLFNVAKKIYPLRKVEIIKIKVLEYPR 200
>UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 215
Score = 60.1 bits (139), Expect = 6e-08
Identities = 44/193 (22%), Positives = 87/193 (45%), Gaps = 1/193 (0%)
Frame = -2
Query: 692 KDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKF 513
K+W V AP +F + +G + N+ + + R EVSL++L D S+ K
Sbjct: 25 KEWKIVIAPKIFEYKIIGYIINNKYTNNSGRLKEISKRNLEVSLSELINDYS---SYYKI 81
Query: 512 RLIAEYVQGRNVL-CNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 336
+ Y + + F+G L+ D + MV K L+E +I + T V+ +F + +T
Sbjct: 82 IKLQPYTMNKMFIRTTFNGFRLSYDFIFSMVLKPTKLVEFSIKINTLKKKVVEIFVL-YT 140
Query: 335 NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHG 156
+L Y + +++R I ++ I + + N + + D I I++
Sbjct: 141 ITKNLHSNSITYGKRSRIRKINRESILCIKKMLENKPIDFIYKICCSDVIGNSIKRRSKR 200
Query: 155 IYPLRDVCIRKVK 117
+ P+++ I ++K
Sbjct: 201 VIPIKNFIISRIK 213
>UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S
ribosomal protein S3a; v-fos transformation effector
protein 1; n=2; Eutheria|Rep: Similar to ribosomal
protein S3a; 40S ribosomal protein S3a; v-fos
transformation effector protein 1 - Homo sapiens (Human)
Length = 119
Score = 58.0 bits (134), Expect = 3e-07
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = -2
Query: 764 GKIKACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTT 633
GK K + KKG KKK++D F++KDWYDVKA +MF+ R +G T
Sbjct: 4 GKNKCFMKGSKKGAKKKVIDQFSKKDWYDVKALAMFNIRNIGKT 47
Score = 50.4 bits (115), Expect = 5e-05
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = -2
Query: 143 RDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGD----KSERPEGYEP 3
R +C++KVK+LK+P+FE+ KLMELH GD K ER EGYEP
Sbjct: 63 RVMCLKKVKMLKKPKFELGKLMELHGDSSSSGKAIGDETGAKVERAEGYEP 113
>UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasmatales|Rep: 30S ribosomal protein S3Ae -
Picrophilus torridus
Length = 209
Score = 57.6 bits (133), Expect = 3e-07
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 1/202 (0%)
Frame = -2
Query: 707 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK-GRVFEVSLADLQADTDAE 531
D + K WY + APS +R++ + A L GR EV ++D +
Sbjct: 11 DKWKEKTWYTIVAPSFLGEREIALS--------PAADPSLMIGRKVEVPVSDFTGNFRKS 62
Query: 530 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 351
+ FR+ + G+ F G ++ D +R MV++ + I+ + KT DGY L V
Sbjct: 63 STMVIFRV--KECTGKRCTTEFIGHKVSDDTIRRMVRRRKERIDIIMPSKTKDGYRL-VI 119
Query: 350 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 171
I + L+ K +R K+ I + L E+ +I D++ DI
Sbjct: 120 KIVLVSDSKLTANKR--------GEVRSKIIGFINERCGSMTLPELAQYIIGDNVYNDIV 171
Query: 170 KACHGIYPLRDVCIRKVKVLKR 105
+YP++ + IRK +VL R
Sbjct: 172 DTLKDVYPIKKIEIRKSEVLGR 193
>UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasma|Rep: 30S ribosomal protein S3Ae -
Thermoplasma volcanium
Length = 215
Score = 56.0 bits (129), Expect = 1e-06
Identities = 54/218 (24%), Positives = 94/218 (43%)
Frame = -2
Query: 722 KKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQAD 543
+KK + + K WY V+AP ++V L S + RV EV +++L +
Sbjct: 7 QKKGKEKWKEKVWYTVEAPPYLGSKEVSVALGED-------SNSMVNRVVEVPISELTGN 59
Query: 542 TDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYV 363
FR+ +G F G + D +R +V++ + I+ DVKT+D +
Sbjct: 60 FKKSNEKALFRITN--CEGTKCKTIFIGHYIGDDYIRRLVRRRKERIDIIEDVKTSDNSI 117
Query: 362 LRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIA 183
+ V + T+ + +K IRK + + I + E V LI D I
Sbjct: 118 ITVKIVVVTDGKVTNTKKF---------QIRKVLTDFILNKGLSLPYSEFVRYLIGDDIY 168
Query: 182 KDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 69
D+ A IYPL+ + +RK +++ +S + E+H
Sbjct: 169 NDMISATKDIYPLKKIEVRKSELV-----SLSGISEIH 201
>UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2;
Thermoprotei|Rep: Ribosomal protein S3AE - Cenarchaeum
symbiosum
Length = 203
Score = 55.2 bits (127), Expect = 2e-06
Identities = 50/214 (23%), Positives = 94/214 (43%)
Frame = -2
Query: 722 KKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQAD 543
K K+ D + K W + AP F+ V V T + KGRV EV+L D+
Sbjct: 5 KIKVKDKWRDKRWITIHAPDSFNS--VPAARVPITD-----DKHAKGRVIEVTLFDILKG 57
Query: 542 TDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYV 363
+ +++ + I + V + F + + + LR +V++ + + +DVKT+DGYV
Sbjct: 58 DPQQNNYKIYFQI-DKVSEESATSIFKRYEYSKEYLRSLVRRGSSKVNYIVDVKTSDGYV 116
Query: 362 LRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIA 183
R+ + T + + +K A+R + ++I V + + V I
Sbjct: 117 FRLKVLALTYRHLNTSKK---------HALRLIIRDVIENTVPQMNIDQFVQAACYGKIN 167
Query: 182 KDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKL 81
DI + +R + + KVK+++ +I+ L
Sbjct: 168 SDILSRAKKLVKVRHMGLEKVKLVRTAEEQITLL 201
>UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_72, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 168
Score = 52.0 bits (119), Expect = 2e-05
Identities = 30/83 (36%), Positives = 49/83 (59%)
Frame = +3
Query: 486 SLHIFGD*SEFAERPFRVSVSL*ISQGNFENSSLQSFRSNFRSLGTVDKRGADLPLAEHR 665
SLH+ G S+ + + L ISQGN ++S L+ FR + S + +K A++ AE R
Sbjct: 61 SLHVLGSQSDLPVG--MILIVLNISQGNLKHSVLEPFRGDLGSQSSANKGFANISDAEDR 118
Query: 666 RSLDIVPIFASEWVDNLLLNTFF 734
R L+++P+ S+ V LLL++ F
Sbjct: 119 RRLNVIPVLLSKRVGCLLLSSLF 141
>UniRef50_Q74N14 Cluster: 30S ribosomal protein S3Ae; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3Ae -
Nanoarchaeum equitans
Length = 198
Score = 38.7 bits (86), Expect = 0.17
Identities = 47/200 (23%), Positives = 90/200 (45%), Gaps = 1/200 (0%)
Frame = -2
Query: 719 KKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADT 540
KK D + RK W+ +KAP++F++ ++G T + E + GR E+++A + +
Sbjct: 5 KKYAD-WKRKIWFTIKAPAIFNEVELGETPAYK-------PEQVIGRRVELNMALVTNNY 56
Query: 539 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 360
+ F++ V+G G+ + ++ V+ + I + +K D ++
Sbjct: 57 QLQNYKGIFKITK--VEGTTAKTELEGIKMYESIIQKWVEPGRDKITDSFVIKDKDNRLV 114
Query: 359 RVFCIGFTNKDSLSQRKTCYAQHTQVRAI-RKKMCEIITRDVTNSELREVVNKLIPDSIA 183
RV + TN R+ Q T +R I R E+ + + +++NK IP+ +
Sbjct: 115 RVKPVLITN------RRLHRKQGTAIRNIWRNYFVELGKKLSFEDMVMKILNKEIPEQLK 168
Query: 182 KDIEKACHGIYPLRDVCIRK 123
I+K IYP IR+
Sbjct: 169 IQIKK----IYPPLFFAIRQ 184
>UniRef50_Q87BL9 Cluster: DNA helicase; n=5; Xylella fastidiosa|Rep:
DNA helicase - Xylella fastidiosa (strain Temecula1 /
ATCC 700964)
Length = 1190
Score = 34.3 bits (75), Expect = 3.6
Identities = 22/82 (26%), Positives = 32/82 (39%)
Frame = -2
Query: 728 GVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 549
G++++ D W + + + Q T + A GL +VSLAD
Sbjct: 548 GMQRQCDDRLQEHSWAVTRGEKVLHEEQCHITTWQAALAKESALTGLMEAAGQVSLADCD 607
Query: 548 ADTDAERSFRKFRLIAEYVQGR 483
A D FR F L Y +GR
Sbjct: 608 ALADTSIRFRIFLLTTHYWEGR 629
>UniRef50_A6FVI8 Cluster: Surface repeat protein, putative; n=2;
cellular organisms|Rep: Surface repeat protein, putative
- Roseobacter sp. AzwK-3b
Length = 5954
Score = 34.3 bits (75), Expect = 3.6
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 12 ALRPFRLVSGFPLASTAFAVKFHQLR-DLETGPLQHFHLSDANIAQRVDAMAGLLDVLGN 188
AL RL + P+ V QL D+ TGP+ H + D Q V A GL+D+ GN
Sbjct: 5486 ALSVLRLGALVPVGPDGLGVALDQLDLDVTTGPV-HLNERDGIDLQSVIARDGLIDIFGN 5544
Query: 189 GV 194
G+
Sbjct: 5545 GL 5546
>UniRef50_Q4SVA9 Cluster: Chromosome undetermined SCAF13769, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF13769, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 556
Score = 33.9 bits (74), Expect = 4.8
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +1
Query: 388 SMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSAC 552
S+L S+ +C L++ +SLS+ S+ + +LRPC ++ ++L LS VS C
Sbjct: 389 SVLVSLSLCLSLSVLVSLSLSSSLSLSVPVSLRPCLSLSVLVSL--SLSVPVSLC 441
>UniRef50_Q4P2U9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 3702
Score = 33.5 bits (73), Expect = 6.3
Identities = 27/106 (25%), Positives = 52/106 (49%)
Frame = -2
Query: 491 QGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQR 312
Q ++ CN G+D+ D+++ V + +ID D VF G D+L R
Sbjct: 517 QAFDLFCNARGLDVLVDRIKAEVNR-------DIDDGAADRMSDSVF--GEPGPDNLYGR 567
Query: 311 KTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDI 174
+ + + + +R++ K + +++ T LR +VN +PDS+ + I
Sbjct: 568 LS-FGRASLLRSMFKTITQMMASTGTGDGLRNLVNTSLPDSLKRII 612
>UniRef50_Q751J3 Cluster: Serine/threonine-protein kinase TEL1; n=2;
Eukaryota|Rep: Serine/threonine-protein kinase TEL1 -
Ashbya gossypii (Yeast) (Eremothecium gossypii)
Length = 2768
Score = 33.5 bits (73), Expect = 6.3
Identities = 23/83 (27%), Positives = 38/83 (45%)
Frame = +1
Query: 82 NFEISKRGLFNTFTFRMQTSRRG*MPWQAFSMSLAMESGINLFTTSLSSELVTSRVMISH 261
N + GLF TF RM T + M W ++++ +L T LSS L+ +R
Sbjct: 2010 NSSVEHYGLFKTFARRMSTIQSAKMLWSQNETVMSIDMLKDLLHTPLSSNLI-ARARKQP 2068
Query: 262 IFFLIALT*VCWA*HVLRWLKES 330
F +A+ + +++WL S
Sbjct: 2069 FFQQMAILDINVKAQLVQWLSHS 2091
>UniRef50_Q119K9 Cluster: Putative uncharacterized protein precursor;
n=1; Trichodesmium erythraeum IMS101|Rep: Putative
uncharacterized protein precursor - Trichodesmium
erythraeum (strain IMS101)
Length = 2322
Score = 33.1 bits (72), Expect = 8.3
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 237 DVACNDFTHFLSDCSDLSVLGVARLALAQGVLIGET 344
+V NDF LSD ++S LG+A +A G+LI T
Sbjct: 2048 EVGLNDFQLMLSDRLEMSFLGIANFQVAGGLLINGT 2083
>UniRef50_A0YI31 Cluster: DNA mismatch repair protein; n=5;
Cyanobacteria|Rep: DNA mismatch repair protein - Lyngbya
sp. PCC 8106
Length = 563
Score = 33.1 bits (72), Expect = 8.3
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 439 LSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSAS--VSACRSARETSKTLPFNPSEAIFV 612
L VR++P ++ + C + I L+L KDL A+ +ACRSA L + +
Sbjct: 463 LWAVRTVP-EMLAQREDCHDALIELSLGKDLQAAQVATACRSAIRNGTPLSLTEMQTLLE 521
Query: 613 PWVR 624
WVR
Sbjct: 522 QWVR 525
>UniRef50_Q7R086 Cluster: GLP_56_8972_10474; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_56_8972_10474 - Giardia lamblia ATCC
50803
Length = 500
Score = 33.1 bits (72), Expect = 8.3
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +1
Query: 493 TYSAINLNLRKDLSASVSACRSARETSKTLPFNPSEAIFVPWVRLTSVVPTCLLLNIDGA 672
T SA +N ++ L+ +S CR +++LP N S I +P R ++ T L + G+
Sbjct: 332 TNSADIMN-KEPLAVCISLCRP----NQSLPNNLSNVISIPVCR--NLKYTTNLSRVLGS 384
Query: 673 L-TSYQSLRVNGSTIFFLTPFFTALRQAFIF 762
+ ++Q LR NG+ IF+ AFIF
Sbjct: 385 IHATFQELRSNGTVIFYSGQDCQVALAAFIF 415
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 800,744,760
Number of Sequences: 1657284
Number of extensions: 16870510
Number of successful extensions: 51207
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 49073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51155
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -