Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d19
         (798 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...   369   e-104
EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.           28   0.38 
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    27   0.89 
AY344814-1|AAR03842.1|  286|Anopheles gambiae LRR Toll protein.        27   0.89 
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   6.3  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   8.3  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score =  369 bits (908), Expect = e-104
 Identities = 179/260 (68%), Positives = 207/260 (79%), Gaps = 6/260 (2%)
 Frame = -2

Query: 764 GKIKACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK 585
           GK K   +  KKG KKK+VDPFTRKDWYDVKAP+MF  RQ G TLVNRTQGTKIAS+GLK
Sbjct: 4   GKNKGVSKGGKKGSKKKVVDPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGLK 63

Query: 584 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 405
           GRVFEVSLADLQ + DAERSFRKF+L+AE V GR+VL NFHGM LTTDKLR MV KWQTL
Sbjct: 64  GRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVNKWQTL 123

Query: 404 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 225
           IE ++DVKTTDG++LRVFCIGFT KDS+SQRKTCYAQH+Q++ IR KM  II R++T+++
Sbjct: 124 IECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTD 183

Query: 224 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXX 45
           L+ VV KL+PDSIAKDIEKAC  +YPL DV IRKVKVLK+PRF++S LMELH        
Sbjct: 184 LKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGDGGGKAA 243

Query: 44  XXGDKSE------RPEGYEP 3
                +       RPEGYEP
Sbjct: 244 EVSTGAASGVVVVRPEGYEP 263


>EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = -2

Query: 569 VSLADLQADTDA-ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 408
           V+LA+L A +D  E    ++  I + +QG+ V      +DL+++KL +M  ++Q+
Sbjct: 181 VNLAELAASSDTLEHLNLQYNFIYD-IQGQVVFAKLKTLDLSSNKLAFMGPEFQS 234


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 153 LPSARCLHPKGESVEEAPFRDLEVDGT 73
           +P   C H  G ++E+A    LE DGT
Sbjct: 557 MPPKGCSHDDGPALEKAQLYQLESDGT 583


>AY344814-1|AAR03842.1|  286|Anopheles gambiae LRR Toll protein.
          Length = 286

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = -2

Query: 569 VSLADLQADTDA-ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 408
           V+LA+L A +D  E    ++  + + +QG+ V      +DL+++KL +M  ++Q+
Sbjct: 106 VNLAELAASSDTLEHLNLQYNFMYD-IQGQVVFAKLKTLDLSSNKLAFMGPEFQS 159


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 123 LSDANIAQRVDAMAGLLDVLGNGVRNQLV 209
           L+ AN  QR++    L D++G+  RN+++
Sbjct: 560 LAIANALQRINTPKYLYDIIGDYFRNRVL 588


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +2

Query: 98  NGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP 214
           NG    +   G  H   G    RPSR    ++  S C P
Sbjct: 146 NGLGLEVLNIGTSHTFRGCGSARPSRIDVAFASPSICRP 184


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 843,638
Number of Sequences: 2352
Number of extensions: 18734
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83992206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)