Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d18
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    29   0.77 
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    27   3.1  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   5.4  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   7.2  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    26   7.2  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    26   7.2  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   9.5  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   9.5  

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = -3

Query: 747 PVSPSVQYLGGGIHLVKSAPLTKLSPVIDAKMNKSKSGAIYVSFGSSIDTKSFANEFFYM 568
           P S     +   +  + + PL   SP+++      K      S  ++ D K   + F Y 
Sbjct: 447 PSSIEYNIISNILFSIPTIPLKNASPIVELISYVMKPEFFMKSQQNASDCKKLLSSFLYF 506

Query: 567 LINTFKALDNYTIL 526
           LIN F   DN  I+
Sbjct: 507 LINNFN--DNLHII 518


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -3

Query: 738 PSVQYLGGGIHLVKSAPLTKLS--PVIDAKMNKSKSGAIYVSFGSSIDTKSFANEFFYML 565
           P++  +GGG  ++    LT +   PVI    ++   G + +   SSID    ++    + 
Sbjct: 263 PNLTTVGGGF-VINDTGLTSIDGFPVI----SEIGGGLVLLGNFSSIDMPDLSDVKGALT 317

Query: 564 INTFKALDNYTILWKIDDEVVK 499
           + T KA  N+T  W  DD V+K
Sbjct: 318 VET-KAT-NFTCPWSNDDSVIK 337


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 222 ASTYKKHMAELYALINNDKATFPPLDKAIK 133
           A+ Y  H  E     NND+  +PP ++  K
Sbjct: 100 ANRYNSHRPERRRKTNNDRRNYPPQNRTAK 129


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 288 ALDTVTVSS-DQLLLAINDVLFNASTYKKHMAELYALINNDKATFPPLDKA 139
           AL +  +S  D+LL A+ ++      YKK  A+ Y  I N+ +    L KA
Sbjct: 108 ALSSAPLSDFDELLPAVYEIREKDVLYKKEDADKYGFIFNENSVPRVLKKA 158


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = -3

Query: 711 IHLVKSAPLTKLSPVIDAKMNKSKSGAIYVSFGSSIDTKSFANEFFYM-LINTFKALDNY 535
           I L K++ ++KL   +  ++N   +G+I +S  S I +    +EF +  L+N     ++ 
Sbjct: 49  ILLQKASRISKLDEAL-CELNNESNGSIDLSIDSFIPSY---DEFLHKKLLNEDTGHES- 103

Query: 534 TILWKIDDEVVKNITLPANVITQNWF 457
               K+ D+V + I+ P +   + WF
Sbjct: 104 ----KVSDQVKQVISTPMSTCFEQWF 125


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 638 LFDLFIFASMTGLNLVNGALFTRWIPPPRYWTLGDTGRL 754
           LFDL +     G  L    LF R +PP   + +G  G L
Sbjct: 140 LFDLVLTLGGDGTVLYTSRLFQRTVPPIMPFAMGTLGFL 178


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -2

Query: 748 TRVAQR---PVSWRRNPSCKKCAVDQIKSGHRRENEQVKKRSDLRK 620
           TRV+ R     S +++PS K+ + D+I+     E   V    D+ K
Sbjct: 295 TRVSPRRSTAASKKKSPSSKRASSDEIEKDKEEEEGSVANEEDVAK 340


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 329 NWSPIMGRHTMGIPAS-KASSLDCSPPCV 412
           N +P  G H + +PAS  ASS+   PP V
Sbjct: 522 NETPYRGLHDVNLPASGNASSVSAIPPQV 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,417,865
Number of Sequences: 5004
Number of extensions: 71327
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)