Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d18
         (797 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ618923-1|CAF02002.1|  155|Anopheles gambiae odorant-binding pr...    25   2.0  
X95912-1|CAA65156.1|  696|Anopheles gambiae immune factor protein.     25   3.6  
AF364131-1|AAL35507.1|  378|Anopheles gambiae putative odorant r...    23   8.3  

>AJ618923-1|CAF02002.1|  155|Anopheles gambiae odorant-binding
           protein OBPjj5c protein.
          Length = 155

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +3

Query: 609 STQNLRKSLRFLTCSFS---RR*PDLIWS 686
           S Q +  S RFL C+FS   R  PD+ W+
Sbjct: 101 SPQCIPSSFRFLQCTFSIVYRDCPDIYWN 129


>X95912-1|CAA65156.1|  696|Anopheles gambiae immune factor protein.
          Length = 696

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 716 PPRYWTLGDTGRLLSNMGCRF 778
           PP Y TLG TG  + N+  +F
Sbjct: 474 PPAYTTLGGTGGTMGNLFGQF 494


>AF364131-1|AAL35507.1|  378|Anopheles gambiae putative odorant
           receptor Or2 protein.
          Length = 378

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/38 (21%), Positives = 22/38 (57%)
 Frame = -3

Query: 207 KHMAELYALINNDKATFPPLDKAIKFTERVIRYRHDIS 94
           +H   + +  ++    F  L + +K+ +++I+Y HD++
Sbjct: 211 RHSGTMASTGHSAGTLFAELKECLKYHKQIIQYVHDLN 248


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 875,758
Number of Sequences: 2352
Number of extensions: 18678
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83992206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)