Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10d17
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 31 0.18
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 28 1.3
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 27 2.9
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 27 2.9
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.9
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 27 3.9
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 6.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.7
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 8.9
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 8.9
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 31.1 bits (67), Expect = 0.18
Identities = 12/60 (20%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = -3
Query: 719 NRAFYNKSNMDQLIAIVNFLEK--KNINYILNVMPVMQDERKMSKRKKKVINNNKYILFN 546
+R+F + +++A++N ++ ++IN++ + + ++ K + K++V+ K +LF+
Sbjct: 429 SRSFSLRLRRSEIVALINTFDRLSRSINFVDDFKQIYSEQHKPASFKRRVLRRIKQLLFS 488
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -3
Query: 668 NFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNS---WYTKIKQPEWPSSPA 498
+ L +K N ++ V + + K + +K V+ N IL NS W IK+P S P
Sbjct: 902 SILYEKQKNLQASITEVSK-QLKSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPV 960
Query: 497 MWDLVKNTPELADFV 453
D N +L +
Sbjct: 961 SMDFTSNDEQLVQLL 975
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -3
Query: 701 KSNMDQLIAIVNFLEK---KNINYILNVMPVMQDERKMSKRKKKVINNN 564
+ N+D L+A VNFL K N ++ V M + +KR ++++++N
Sbjct: 157 QQNVDMLVAKVNFLSKHLHDNEEKLMQVNAKMDEVLAENKRLQQLLDHN 205
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 27.1 bits (57), Expect = 2.9
Identities = 28/106 (26%), Positives = 46/106 (43%)
Frame = -3
Query: 320 AELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKTVALKL 141
AEL + + L FY L N V+ +L S+Y RD + + L
Sbjct: 24 AELPKPSIRPETLTDRFYGLTNYGNTCYVSSVLVSLYHLKPFRDSLN---------SYPL 74
Query: 140 PVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTXCGSNTFN 3
P AP + V T + + +S ++ S++NR+++ GSN N
Sbjct: 75 PSAPPNFKSVCTKTNHPES--SSSRHSKKKSMENRKSSLYGSNGIN 118
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -3
Query: 623 PVMQDERKMSKRKKKVINNNKYILFNSWYTK 531
P++ + +K+S + K++ +N Y N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 119 EYVPTSISGSKKRKNSVPAKQRSSIKN 39
EY+P SI G+K K + K+ IKN
Sbjct: 472 EYLPDSIKGTKFYKLPIELKEDEEIKN 498
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 612 LHDRHYVEDIVNVLFF 659
L+DR YVE I+++LFF
Sbjct: 253 LYDRVYVEKILDILFF 268
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 6.7
Identities = 22/78 (28%), Positives = 40/78 (51%)
Frame = +1
Query: 115 YSVVDGATGNLSATVLNLAIFLVMKSRVNTSS*MLLSRGATLLLNVSFNKL*NSE*SLSR 294
YSV++ +T S+TVLN + + S +N+S+ + S ++ + + NS ++
Sbjct: 591 YSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITS 650
Query: 295 ISQLSFNSAKFALVSTAV 348
S L NS+ STA+
Sbjct: 651 SSVL--NSSTPITSSTAL 666
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -3
Query: 596 SKRKKKVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 465
S R++ V NNN +FN S++ KI + + +WD ++N +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = -3
Query: 332 NANLAELKESCEMRDKLYSEFYS--LLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFK 159
NA + +K+S + F ++ FNNN+ L + + D + ++++K
Sbjct: 523 NAQVEIVKKSLSSEFDIRQSFKENWVVKSNFNNNLRKLHEKLQSLFASYDKLQEDLSKRL 582
Query: 158 TVALKLPVAPSTTEYVPTSISGSK 87
L +P+ YV +SG++
Sbjct: 583 GKKATLRKSPAKLYYVHLKLSGNE 606
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,128,373
Number of Sequences: 5004
Number of extensions: 66154
Number of successful extensions: 251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -