Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d12
         (787 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    36   0.001
AJ697720-1|CAG26913.1|  207|Anopheles gambiae putative odorant-b...    25   2.0  
AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical prote...    25   2.0  
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    24   6.1  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 36.3 bits (80), Expect = 0.001
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
 Frame = +2

Query: 146 REPELAVPRVELRVVLADEHVPQDPQRAHGLRHVQRHEAGQAHRVPELRHPEHVV----- 310
           R+P L  P     V+L+D ++P   Q+    RH+ + +A   H + + ++P  V+     
Sbjct: 586 RQPSLQQPLTTTTVLLSDHYLPLQQQQQQQARHLPQQQA--IHHIHQQQYPRQVIHRRPS 643

Query: 311 ---VALEREVVPGDGKGDSRQVRY--EAAVHDVLPEGDGRGAHRR 430
              V L  E +  DG G S        A   D+ P     G   R
Sbjct: 644 TSSVELSEESMDSDGGGASGDFHCLPSATGRDISPSASAAGLTTR 688


>AJ697720-1|CAG26913.1|  207|Anopheles gambiae putative
           odorant-binding protein OBPjj10 protein.
          Length = 207

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 305 RAPGGAIRAHGVPVRLHGAGRAEAHGP 225
           R PG  +   G  +R+H + R  A+ P
Sbjct: 53  RVPGWRLSTSGASIRMHASARKRAYCP 79


>AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical protein
           protein.
          Length = 297

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 15/64 (23%), Positives = 27/64 (42%)
 Frame = +2

Query: 341 DGKGDSRQVRYEAAVHDVLPEGDGRGAHRRVEGFHLLGGPGDQRRARVGDGRAALGTEAA 520
           + K +S  +    ++ D++PE   RG H        +G    +R  R+ D      TE  
Sbjct: 93  NSKSESNNLSLSLSLVDMIPEEKLRGRHSSESDREGMGHDSHKRTHRLSDSDGG-STEGC 151

Query: 521 SVDI 532
           + D+
Sbjct: 152 NYDL 155


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 212 QDPQRAHGLRHVQRHEAGQAHRVPELRHPEHVVVALEREV 331
           Q  Q+ H   H  +H+  Q H+     HP H  V  + E+
Sbjct: 305 QQQQQQH---HHHQHQPQQQHQQQYHSHPHHTPVQFKTEL 341


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 767,888
Number of Sequences: 2352
Number of extensions: 15686
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82328994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)