Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d12
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.8  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   9.8  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 778 VRRILGMAFSTIAVDHVTPVFDNMVAQGLVQPVF 677
           VR++LG  + +     V P    M +  L  PVF
Sbjct: 384 VRKVLGFGYESNVKYQVVPSALQMWSTSLRDPVF 417


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 778 VRRILGMAFSTIAVDHVTPVFDNMVAQGLVQPVF 677
           VR++LG  + +     V P    M +  L  PVF
Sbjct: 384 VRKVLGFGYESNVKYQVVPSALQMWSTSLRDPVF 417


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = -1

Query: 325  TLEGNDYVLRVAQFGHTVCLSGFMALDVPKPMGPLWILGDVFIGKYYTEFDAGNRQL 155
            T +G DY LR+    H V ++ +  ++       L I  D  +     E +AG +++
Sbjct: 1453 TFDGKDYPLRLGPCWHAV-MTTYPRINPDNHNEKLHIPKDKSVSVLSRENEAGQKEV 1508


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 778 VRRILGMAFSTIAVDHVTPVFDNMVAQGLVQPVF 677
           VR++LG  + +     V P    M +  L  PVF
Sbjct: 10  VRKVLGFGYESNVKYQVVPSALQMWSTSLRDPVF 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,543
Number of Sequences: 438
Number of extensions: 4116
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)