Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10d11
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 61 2e-10
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 31 0.16
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 31 0.22
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 31 0.22
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 30 0.38
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 30 0.50
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 29 0.87
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 28 1.5
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 28 1.5
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 28 1.5
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 28 1.5
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 28 2.0
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 28 2.0
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 27 2.7
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 27 2.7
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 27 3.5
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 3.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.5
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 3.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 6.1
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 26 8.1
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 26 8.1
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 26 8.1
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 26 8.1
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 26 8.1
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 26 8.1
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 61.3 bits (142), Expect = 2e-10
Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 16/227 (7%)
Frame = -3
Query: 733 NDLKVWRVGESQPTFSAKNLAHDWLQLRQPVWVTDLVF-------VPGEGGRVVAVC--- 584
++L++WR F KN+ +D L LR VW+T +VF + G+ ++C
Sbjct: 166 DELELWRTENVVKVFQGKNVKNDSLNLRVRVWITGIVFTEDIINVIDGKSEDDESLCFHF 225
Query: 583 ---SRHGYVRLYDTRSQRRPVQNVTFDLAATCIA-PSISTRLALVGFA--RGQLRQVELR 422
+ +G +R YDT+ RRPV TFD++ + ++ + + L+ FA R Q+ +
Sbjct: 226 ATITHYGQLRFYDTKHGRRPVS--TFDVSTSPLSHVGLLPSIKLLYFADKRAQISIFDHS 283
Query: 421 LGRPDKGYKXXXXXXXXXXXXXGRVLSTSLDRHLYVHRYSDKELVHKQYLTSKPSCILVQ 242
+ ++ V T LDR++ + +D++ + Y+ + P+ I+V
Sbjct: 284 KKKVIGRFQGVKGAPSSIHCLGNVVAITGLDRNVRIFD-ADRKPLANAYIKALPTSIIVI 342
Query: 241 TETETPLRKAKSEREVDDVTEPADDMDAIFETMETVGDPGPVSKRSK 101
E + + K E E++ E +++ E +E D P SKR K
Sbjct: 343 NERDAEI--IKKEEELEAAKEEEEEIWRNMEQLEDTEDKKP-SKRIK 386
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 31.5 bits (68), Expect = 0.16
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = -3
Query: 865 VSAVSSGTVRVWGDDANEDIFT----GGKLDRMRVCSDDTLFATGGEENDLKVW-RVGES 701
+SA S G V++W N + T L + V S ++ATG +K+W +G++
Sbjct: 1195 ISASSDGEVKLWDIRMNHSLQTFSTDNSGLTSLTVHSHAPVYATGSSNQSIKIWDTLGQN 1254
Query: 700 QPTF 689
TF
Sbjct: 1255 INTF 1258
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 31.1 bits (67), Expect = 0.22
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 769 SDDTLFATGGEENDLKVWRVGESQPTFSAKN 677
S++ L A+GG +N L VW E +P +S N
Sbjct: 384 SNENLLASGGNDNALMVWDKFEEKPLYSFHN 414
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 31.1 bits (67), Expect = 0.22
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = -3
Query: 271 TSKPSCILVQTETETPLRKAKSEREVDDVTEP----ADDMDAIFETMETVGDPGPVSKRS 104
T+KP+ Q++TETP K SE + P A E +T P K++
Sbjct: 146 TTKPAAPAAQSKTETPAPKVTSESTKKETAAPPPQETPTKSADAELAKTPSAPAAALKKA 205
Query: 103 KPSLEGSTEVVEDTD 59
+ E +T + TD
Sbjct: 206 AEAAEPATVTEDATD 220
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 30.3 bits (65), Expect = 0.38
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = -3
Query: 757 LFATGGEENDLKVWRVGESQPTFSAKNLAHDWLQLRQPVWVTDLVFVPGEGGRVVAVCSR 578
+ ATGG++ KVW + +F +NL Q VT+L F P G +AV +
Sbjct: 314 ILATGGQDTTAKVWDIRALGKSF--RNLG------SQMSAVTNLCFSP--LGESLAVTEQ 363
Query: 577 HGYVRLYDTR 548
+V+L+DT+
Sbjct: 364 ADFVQLFDTK 373
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 29.9 bits (64), Expect = 0.50
Identities = 20/95 (21%), Positives = 40/95 (42%)
Frame = -3
Query: 763 DTLFATGGEENDLKVWRVGESQPTFSAKNLAHDWLQLRQPVWVTDLVFVPGEGGRVVAVC 584
D + A+GG+++ + +W+V E H +L+ LV V+A
Sbjct: 94 DQVLASGGDDSKIMIWKVPEDYTVMEPYEDVHPIAELKGHSRKVGLVQYHPTAANVLASS 153
Query: 583 SRHGYVRLYDTRSQRRPVQNVTFDLAATCIAPSIS 479
S ++L+D + V +V+ + C + S +
Sbjct: 154 SADNTIKLWDC---EKGVAHVSLKMDVMCQSMSFN 185
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 29.1 bits (62), Expect = 0.87
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Frame = -3
Query: 874 NTXVSAVSSGTVRVWGDDANEDIFTGGKLDR------MRVCSDDTLFATGGEENDLKVW 716
NT S+ GTV+VW ++ FT DR D T G++N +KVW
Sbjct: 155 NTFASSCLDGTVKVWSFGSSVANFTLQAHDRGVNYVNYYPAGDKPYLITAGDDNLIKVW 213
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 28.3 bits (60), Expect = 1.5
Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 4/164 (2%)
Frame = -3
Query: 763 DTLFATGGEENDLKVWRVGESQPTFSAKNLAHDWLQLRQPVWVTDLVFVPGEGGRVVAVC 584
+T F +G ++ +KVW + + D++ R W++ V G
Sbjct: 136 NTTFLSGSDDKTVKVWDLSTGAVQYDLSG-HEDYV--RTASWMSATRLVSG--------- 183
Query: 583 SRHGYVRLYDTRSQRRPVQNVTFDLAATCIAPSISTRLALVGFARGQLRQVELRLGR--P 410
G +RL+DTR V + + A + P + + ++ ++ +L GR P
Sbjct: 184 GYDGTIRLWDTRIADPEVMSFSHGEAIDVVLP-MQSGSTVISAGGPSIKVWDLVAGRQTP 242
Query: 409 DKGYKXXXXXXXXXXXXXG--RVLSTSLDRHLYVHRYSDKELVH 284
K R+LS LD H+ ++ SD ++VH
Sbjct: 243 TKKLSNHQKSITCLAMNSENTRLLSGGLDGHVKIYNISDWKVVH 286
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 28.3 bits (60), Expect = 1.5
Identities = 24/81 (29%), Positives = 37/81 (45%)
Frame = -3
Query: 781 MRVCSDDTLFATGGEENDLKVWRVGESQPTFSAKNLAHDWLQLRQPVWVTDLVFVPGEGG 602
M + +TL ATGG E +KVW + + T S + H + ++ L F +
Sbjct: 109 MTIDPTNTLLATGGAEGLVKVWDIAGAYVTHSFR--GHGGV-------ISALCFGKHQNT 159
Query: 601 RVVAVCSRHGYVRLYDTRSQR 539
V+A + VRL+D S R
Sbjct: 160 WVLASGADDSRVRLWDLNSSR 180
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -3
Query: 865 VSAVSSGTVRVWGDDANEDIFT-GGKLDRMRVCS---DDTLFATGGEENDLKVWR 713
VSA + G V+VW + E + T DR+ + D +L +GG + + VW+
Sbjct: 565 VSAAADGLVKVWSLSSGECVATLDNHEDRVWALASRFDGSLLVSGGADAVVSVWK 619
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +3
Query: 660 SQSWAKFLAENVG--WDSPTRQTFKSFSSPPVANNVSSLQTLILSSFPPVKISSFASSPH 833
S SW+K+L NV WD TR+ F + + P A+ + + SS P ++++S++ +
Sbjct: 259 SSSWSKYLTSNVAKVWD--TRKEFAT-AKIPEASFYGKI--IFSSSGPHIQVASYSGHYY 313
Query: 834 TLTVPL 851
V L
Sbjct: 314 RFAVNL 319
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = -3
Query: 763 DTLFATGGEENDLKVWRVGESQPTFSAKN-LAHDWLQLRQPVWVTDLVFVPGEGGRVVAV 587
+++F N +++W++ E++ F ++ L HDW + Q W + G + V
Sbjct: 237 ESVFMRTSGRNQIQLWKL-ENKTNFKSEFILYHDWGSVLQLEWCPTISVEDSILGFLAVV 295
Query: 586 CSRHGYVRLYDTRSQRRPVQ 527
CS G +R+ R R PV+
Sbjct: 296 CS-DGKLRV--LRVPRSPVK 312
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.9 bits (59), Expect = 2.0
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = -3
Query: 766 DDTLFATGGEENDLKVWRVGESQPTFSAKNLAHDWLQLRQPVWVTDLVFVPGEGGRVVAV 587
DD F +G + L++W + E +F W +L P +T + F P +GG +A
Sbjct: 361 DDRFFLSGSLDCKLRLWSIKEKAVSF--------WNEL--PELITAVAFSP-DGGLAIA- 408
Query: 586 CSRHGYVRLYDTRSQR 539
+ G YDTR R
Sbjct: 409 GTFVGLCLFYDTRGLR 424
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = -3
Query: 769 SDDTLFATGGEENDLKVWRVGESQPTFSAKNLAHDWL 659
SDD LF+TGG E +L V+R+ + +P K + H+ L
Sbjct: 707 SDDILFSTGGLE-ELNVYRLIQ-KPEAYLKRIVHEKL 741
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 27.5 bits (58), Expect = 2.7
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Frame = -3
Query: 865 VSAVSSGTVRVWGDDANEDIFT-----GGKLDRMRVCSDDTLFATGGEENDLKVWRVGES 701
VSA SG + V+ D A+ + G + + V D T FAT ++ +K+W + S
Sbjct: 451 VSAYKSGELEVY-DIASSSLIERIQAHDGAIWDLAVGHDGTYFATASADHTVKLWSLKSS 509
Query: 700 ---QPTFSAKNLAHDWLQLRQPVWVTDLVFVP-GEGGRVVAVCSRHGYVRLY 557
P + K Q RQ + D++ V GR VA V++Y
Sbjct: 510 FDFVPGTTRKVTTLKLEQTRQIDFTDDVLAVKISPDGRFVAASLLDNTVKVY 561
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 769 SDDTLFATGGEENDLKVWRVGESQPTFSAKN 677
SD A+GG +N +++W S P F+ N
Sbjct: 314 SDGLQLASGGNDNVVQIWDARSSIPKFTKTN 344
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 27.1 bits (57), Expect = 3.5
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 595 VAVCSRHGYVRLYDTRSQRRPVQNVTF-DLAATCIAPSISTRLALVGFARGQLRQVELRL 419
+ CS H L RS + + +V F DL AT + + L +VGF G+L+ ++
Sbjct: 44 ILTCSNH----LICCRSNSQRIWDVDFHDLEATELCWNHDGNLIVVGFKNGELKIIDSST 99
Query: 418 G 416
G
Sbjct: 100 G 100
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.1 bits (57), Expect = 3.5
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = -3
Query: 220 RKAKSEREVDDVTEPADDMDAIFETMETVGDPGPVSKRSKPSLEGSTEVVEDTDAAIAKL 41
+KA + D + + DD+ E E+ K+SK +GS E ++D D
Sbjct: 118 KKASPKNAFDALADDMDDLSLDEEESESSEKSKKKKKKSKSKDDGS-EALDDGD------ 170
Query: 40 LRSTEKTRKRREQ 2
+ S+EK +K++++
Sbjct: 171 IESSEKDKKKKKK 183
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 3.5
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +3
Query: 588 TATTLPPSPGTNTRSVTQTGWRSWSQSWAKFLAENVGWDSPTRQTFKSFSSPPVANNVSS 767
T+T++PP+ G+++ S T + + + + PT + +S P+ +S
Sbjct: 117 TSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPI-----PPTSTSSTDTNSNPLPTTSTS 171
Query: 768 LQTLILSSFPPVKISSFASSPHTLTV-PLDTADTNV 872
T +S PP SS S+P T TV P T+ T++
Sbjct: 172 CTTS--TSIPPTGGSSSLSTPITPTVPPTSTSSTSI 205
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 735 SSPPVANNVSSLQTLILSSFPPVKISSFASSPHTLTV-PLDTADTNV 872
SS P+ + +S T +S PP SS S+P T TV P T+ T++
Sbjct: 104 SSSPLPSTSTSCTTS--TSIPPTGGSSSLSTPITPTVPPTSTSSTSI 148
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -2
Query: 671 PRLAPTTPAGLGDRPGVCPRRGGQGGSR 588
P+ A PAG G R G RGG+GGSR
Sbjct: 127 PKGARNGPAGRGGRGGF---RGGRGGSR 151
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 668 RLAPTTPAGLGDRPGVCP-RRGGQGGSRLLPTRLREIVRHSLAKEAGSERDLRLG 507
+L P +P + G+ +R +G S + RLRE+ A++ G +RD +LG
Sbjct: 1024 KLVPASPDKSAVQRGITALKRDAEGMSHIWQLRLREMEFQLKAEQEGRKRD-KLG 1077
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 619 VPGEGGRVVAVCSRHGYVRLYDTR 548
VP + G VCS G R YD R
Sbjct: 150 VPCDNGHTFLVCSEDGTARQYDIR 173
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/57 (22%), Positives = 30/57 (52%)
Frame = -3
Query: 241 TETETPLRKAKSEREVDDVTEPADDMDAIFETMETVGDPGPVSKRSKPSLEGSTEVV 71
+E+ T K R + + ++ + +MD I + ++GD +SK + PS+ +++
Sbjct: 5 SESSTSSYHGKRPRSLSEESQSSSNMDDISQKSISLGDASEISK-NLPSIAEQKQLI 60
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 684 AENVGWDSPTRQTFKSFSSPPVANNVSSLQTLILSSFPPVKISSFASSPHTL 839
+E V W + Q F P ++ ++ + ILS P I S A S TL
Sbjct: 218 SETVTWLNTFLQQFWYIFEPSLSERITEITDQILSENVPSFIDSMALSEFTL 269
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 8.1
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Frame = -3
Query: 874 NTXVSAVSSGTVRVWGDD--ANEDIFTG-----GKLDRMRVC------SDDTLFATGGEE 734
N S G V+VW D + +F G LD +C S+ ATG +
Sbjct: 185 NHFASGSWGGQVKVWNSDNLSEVQLFRGHTDRVSGLDWYPLCQAWDADSEQLTLATGAAD 244
Query: 733 NDLKVWRVGESQP 695
N + +W+ +S P
Sbjct: 245 NTVCLWKASQSTP 257
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 229 TPLRKAKSEREVDDVTEPADDMDAIFETME 140
TP+ +E DV EPA+D A+ + +E
Sbjct: 4 TPVTSQLRLKEFQDVYEPAEDTFALLDALE 33
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 826 DDANEDIFTGGKLDRMRVCSDDTLFATGGEENDLKVWRVGESQP 695
D ANE+ G ++ + LF TGG + +KVW + + P
Sbjct: 538 DGANEEEVDAG-INMAQWQPKGNLFVTGGSDGIVKVWDLRLNNP 580
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,094
Number of Sequences: 5004
Number of extensions: 63373
Number of successful extensions: 310
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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