Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10d11
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0533 - 19178296-19178516,19178790-19178847,19179315-191793... 63 3e-10
03_05_0373 + 23581812-23583293 33 0.30
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 33 0.40
11_05_0077 - 18866707-18867334,18867410-18867555 32 0.69
11_06_0692 + 26327487-26328509 31 1.6
03_06_0305 - 33013315-33013449,33013554-33013691,33013806-330138... 31 1.6
08_01_0213 - 1703682-1703696,1703824-1703919,1704033-1704104,170... 30 2.1
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 30 2.1
07_03_1410 + 26363538-26363777,26365421-26365475,26365553-263656... 30 2.8
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968... 30 2.8
04_04_0990 - 29955207-29955551,29955639-29955813,29955887-299560... 30 2.8
02_02_0081 - 6608901-6609680,6610380-6610808,6610893-6610994,661... 30 2.8
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 29 3.7
05_07_0273 - 28857212-28857294,28857404-28858169 29 3.7
05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778... 29 3.7
03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424... 29 3.7
06_01_1073 - 8762470-8762535,8762743-8762814,8762902-8763009,876... 29 4.9
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220 29 4.9
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 29 4.9
01_06_1762 - 39716723-39717016,39717256-39717332,39717452-397174... 29 4.9
01_01_0038 + 288522-288572,289395-289512,289790-289809,290077-29... 29 4.9
12_02_0971 + 24949137-24950534 29 6.5
11_06_0027 + 19363678-19363698,19364442-19364484,19366240-193662... 28 8.5
08_01_0986 - 9978264-9978593 28 8.5
06_03_1454 - 30261240-30261470,30261896-30262615,30262700-302628... 28 8.5
06_01_1171 - 10007714-10009141 28 8.5
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114... 28 8.5
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 28 8.5
02_05_0098 - 25807993-25808193,25808629-25808710,25808891-258089... 28 8.5
>07_03_0533 -
19178296-19178516,19178790-19178847,19179315-19179370,
19179527-19179646,19180446-19180599,19180911-19181018,
19181134-19181197,19181342-19181518,19181679-19181824,
19181912-19181941,19181999-19182150,19182266-19182347
Length = 455
Score = 62.9 bits (146), Expect = 3e-10
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Frame = -3
Query: 829 GDDANEDIFTGGKLDRMRVCSDDTLFATGGEENDLKVWRVGESQPTFSAKNLAHDWLQLR 650
G ++ D+ G + V + ++ GG+ ++ +W + +SAK+ + LQ+
Sbjct: 167 GPSSSWDVSNSGTVQFSSVDAGESYAMFGGKGIEVNLWDITSCSKIWSAKSPRGNSLQIF 226
Query: 649 QPVWVTDLVFVPGEGGRVVAVCSRHGYVRLYDTRSQRRPVQNVTF-DLAATCIAPSISTR 473
W T F+ + R + C+ + VRLYDT SQRRPV +V F + +A +
Sbjct: 227 TAPWFTAGTFLCKDDHRKIVACTNNHQVRLYDTASQRRPVISVDFRESPIKAVAEDPNGH 286
Query: 472 LALVGFARGQLRQVELR 422
+G RG L ++R
Sbjct: 287 AVYIGTGRGDLASFDMR 303
>03_05_0373 + 23581812-23583293
Length = 493
Score = 33.1 bits (72), Expect = 0.30
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -3
Query: 862 SAVSSGTVRVWGDDANEDIF-TGGKLDRMRVCSDDTLFATGGEENDLKVWRVGESQP 695
+ S VRVW D F TG L + V +DD TG ++ ++VWR P
Sbjct: 122 TGTDSENVRVWRDRRELAGFRTGSGLVKAIVVADDGRIFTGHQDGKVRVWRADAGDP 178
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 32.7 bits (71), Expect = 0.40
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 796 GKLDRMRVCSDDTLFATGGEENDLKVWRVGESQ 698
G + M+ SD ATGGE+ ++VWRV E +
Sbjct: 272 GAIVTMKFSSDGQYLATGGEDGVVRVWRVVEGE 304
>11_05_0077 - 18866707-18867334,18867410-18867555
Length = 257
Score = 31.9 bits (69), Expect = 0.69
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -2
Query: 662 APTTPAGLGDRPGVCPRRGGQGGSRLLP 579
AP A G+ PGV RRG + G RLLP
Sbjct: 57 APDAVAHRGEDPGVGARRGARAGPRLLP 84
>11_06_0692 + 26327487-26328509
Length = 340
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 595 PPCPPRRGQTPGRSPRPAGVVGANRG 672
PP PP+R +P SP PA + RG
Sbjct: 240 PPPPPKRSPSPSPSPSPAPAAASARG 265
>03_06_0305 -
33013315-33013449,33013554-33013691,33013806-33013883,
33013986-33014062,33014439-33014982
Length = 323
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 571 SRVGSRRLPPCPPRRGQTPGRSPRPAGVVGANRG-PSSWQRTLAGTRRRAK 720
+RV +R+LP T R+P PA GA RG SS RT++ R + K
Sbjct: 27 ARVAARKLPAAAVAASLTLDRAPAPA---GAERGMSSSVSRTMSRLREKGK 74
>08_01_0213 -
1703682-1703696,1703824-1703919,1704033-1704104,
1704372-1704444,1704508-1704710,1705058-1706330,
1706800-1706868,1706940-1707088,1707275-1707487,
1708385-1708669
Length = 815
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 580 GSRRLPPCPPRRGQTPGRSP-RPAGVVGANR 669
G RRLPP RG P SP PAG G+ R
Sbjct: 4 GGRRLPPWTSPRGAAPRWSPCTPAGADGSGR 34
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 796 GKLDRMRVCSDDTLFATGGEENDLKVWRVGESQ 698
G + M+ D L ATGGE+ ++VW V +S+
Sbjct: 214 GAILTMKFSPDGQLLATGGEDGVVRVWAVMQSE 246
>07_03_1410 +
26363538-26363777,26365421-26365475,26365553-26365644,
26365732-26365787,26366026-26366101,26366790-26366856,
26367197-26367263,26368276-26368342,26368759-26368842,
26369749-26369904,26370641-26370718,26371323-26371391,
26371476-26371541,26371623-26371751,26372862-26372951,
26373306-26373371,26373768-26373836,26373903-26374007,
26374374-26374499,26374687-26374745,26374832-26374868,
26375370-26375519
Length = 667
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 322 LYVHRYSDKELVHKQYLTSKPSCILVQTETETPLRK 215
++ H S E +H+ L K CI + +T P+R+
Sbjct: 493 IFAHHQSMLEAIHQHLLKKKVKCIRIDGQTPVPVRQ 528
>07_03_0196 +
14995224-14995489,14995859-14995877,14996703-14996839,
14998365-14998457,15001597-15001932,15003035-15003503
Length = 439
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 510 WPPLASRPASARVWRWWGSPGDSSG 436
WP L S P SA W GDSSG
Sbjct: 141 WPTLGSNPGSATACGRWLGAGDSSG 165
>04_04_0990 -
29955207-29955551,29955639-29955813,29955887-29956017,
29956317-29956436,29956908-29956984,29957070-29957316,
29957413-29957569,29958191-29958309,29958421-29958555,
29958636-29958921,29959009-29959211,29959732-29959881,
29960084-29960266,29960931-29961278
Length = 891
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -3
Query: 865 VSAVSSGTVRVWGDDANEDIFT----GGKLDRMRVCSDDTLFATGGEENDLKVW 716
VS S G V++W NE I T GK+ + V + ATGG + L +W
Sbjct: 607 VSCGSDGLVKLWTIKTNECIATFDKHDGKVWALAVGKKTEMLATGGTDAVLNLW 660
>02_02_0081 -
6608901-6609680,6610380-6610808,6610893-6610994,
6611114-6611429,6611624-6611806,6611909-6612030,
6612181-6612251,6612732-6612921
Length = 730
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 173 SGFSDVIDFPLTLRLPQRSF 232
S FSD +DFPL+L LP F
Sbjct: 254 SSFSDDVDFPLSLELPSMDF 273
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -3
Query: 124 GPVSKRSKPSLEGSTEVVEDTDAAIAKLLRSTEKTRKRRE 5
G R K S++ STE +ED D + L T KTRKR++
Sbjct: 667 GKSKARGKRSMDASTEKLEDPD----RDLEDTMKTRKRKK 702
>05_07_0273 - 28857212-28857294,28857404-28858169
Length = 282
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = -2
Query: 659 PTTPAGLGDRPGVCPRRGGQGGSRLLPTRLREIV----RHSLAKEAGSERDLRL 510
P+T A C +R G GG R L ++ RHS A+ + S R LRL
Sbjct: 99 PSTKASFQPSHHFCAKRRGGGGLRTLSFGAKKAAFYGGRHSFARSSCSARSLRL 152
>05_03_0468 +
14376926-14377183,14377534-14377710,14377802-14377867,
14378009-14378134,14378499-14378678,14379015-14379179,
14380185-14380538
Length = 441
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +1
Query: 592 LPPCPPRRGQTPGRSPRPAGVVGANRGPSS 681
LPP P R G GRS PA A+ PSS
Sbjct: 386 LPPAPSRAGSGLGRSVTPATPKTASSSPSS 415
>03_05_0744 +
27336697-27337131,27337329-27337787,27340852-27342418,
27342641-27343044
Length = 954
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = -3
Query: 202 REVDDVTEPADDMDAIFETMETVGDPGPVSKRSKPSLEGSTEVVEDTDAAIAKLLRSTEK 23
RE+ D ADD+ +F ME DPG + + + + + AA K+ R ++
Sbjct: 66 RELKDAMYDADDILDLFRAMEGGEDPGSPPRAAPAPSACWSALCRRSPAATRKIGRKIQE 125
Query: 22 TRKRREQ 2
+R E+
Sbjct: 126 LNRRVEE 132
>06_01_1073 -
8762470-8762535,8762743-8762814,8762902-8763009,
8763089-8763313
Length = 156
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -3
Query: 784 RMRVCSDDTLFATGGEE--NDLKV-WRVGESQPTF 689
R+R SDDT + G+E DLK W E +PTF
Sbjct: 51 RVRAASDDTSTSASGDELVADLKAKWEAIEDKPTF 85
>04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220
Length = 1053
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -2
Query: 632 RPGVCPRRGGQGGSRLLPTRLREIVRHSLAKE 537
RP RRGG+GG RL R RH+L E
Sbjct: 577 RPLPMRRRGGRGGRRLPSPSTRPTTRHALPGE 608
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 556 RTISRSRVGSRRLPPCPPRRGQTPGRSPRPAGVVGANRG 672
R++SRS RR G++P RSP P G RG
Sbjct: 623 RSVSRSASPPRRAISPAQNHGRSPSRSPSPDGSKRVRRG 661
>01_06_1762 -
39716723-39717016,39717256-39717332,39717452-39717498,
39717953-39718053,39718271-39718360,39718556-39720133
Length = 728
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 595 PPCPPRRGQTPGRSPRPAGVVGANRGPSSWQRTLAGTRRRAKLSN--RFL 738
PP ++ + P+P A G S QR+ A +R+AK RFL
Sbjct: 487 PPATSKQPKPSPEKPKPKPQAAATAGAESLQRSTASEKRQAKTDKNLRFL 536
>01_01_0038 +
288522-288572,289395-289512,289790-289809,290077-290109,
290648-290779,290859-290948,291402-291527
Length = 189
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 205 EREVDDVTEPADDMDAIFETMETVGDPGPVSKRSKPSLEGSTEVV-EDTDAAIAKLLRST 29
E+E++++ + D+ + E + +GD P ++R + +L G+ + A +
Sbjct: 120 EKEMEELKKQRDNAQSKLELQKKMGDNQPAARRLREALSGAQRTISRGPKAKLYAFHLQA 179
Query: 28 EKTRKRRE 5
+K R+ R+
Sbjct: 180 QKLRRLRQ 187
>12_02_0971 + 24949137-24950534
Length = 465
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 748 TGGEENDLKVWRVGESQPTFSAKNLAHDWLQLRQPV 641
+G + +KVWRV + +A+ AH W P+
Sbjct: 412 SGSLDGSVKVWRVSSTPDAAAARTPAHGWKATPSPL 447
>11_06_0027 +
19363678-19363698,19364442-19364484,19366240-19366276,
19366359-19366602,19366749-19366765,19366901-19366986,
19367347-19367378,19367455-19367615,19367722-19367818,
19367894-19368085,19368172-19368233,19368302-19368448,
19368776-19369589
Length = 650
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -3
Query: 838 RVWGDDANEDIFTGGKLDRMRVCSDDTLFATGGEENDLKVWRVGESQPTFSA 683
R++G E+ GGK R +VCS + + E+ L ++ + + +A
Sbjct: 140 RLFGQQFGEEYMFGGKFRRSKVCSKCGMLSNSEEDFTLLMFNIPHREQVVAA 191
>08_01_0986 - 9978264-9978593
Length = 109
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 416 PQPQFHLPELSPGEPHQRQTRADAGRDASGGQV 514
PQPQFH+P L+ R T+A R GG V
Sbjct: 40 PQPQFHIPILAASSWWHRNTQA-GSRLLVGGSV 71
>06_03_1454 -
30261240-30261470,30261896-30262615,30262700-30262843,
30262953-30263204,30263542-30263751
Length = 518
Score = 28.3 bits (60), Expect = 8.5
Identities = 22/85 (25%), Positives = 34/85 (40%)
Frame = -3
Query: 766 DDTLFATGGEENDLKVWRVGESQPTFSAKNLAHDWLQLRQPVWVTDLVFVPGEGGRVVAV 587
D +L +G ++ +W E PTF A + H V +F+P G R +
Sbjct: 97 DGSLLLSGSDDRAAVLWNWQEGTPTF-AFHTGHS-------DNVFHALFMPFSGDRSIIT 148
Query: 586 CSRHGYVRLYDTRSQRRPVQNVTFD 512
C+ G VR + R + N D
Sbjct: 149 CAADGQVRHSQIQEGGRVITNELVD 173
>06_01_1171 - 10007714-10009141
Length = 475
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -3
Query: 703 SQPTFSAKNLAHDWLQLRQPV--WVTDLVFVPGEGGRVVAVCS 581
S PT +L H LR+P+ WV GEGGRVVAV S
Sbjct: 84 SGPTSVGVDL-HALAALREPLGEWVRARARSGGEGGRVVAVLS 125
>05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,
1147544-1147645,1147767-1147889,1147996-1148622,
1148710-1148883,1148965-1149181,1149312-1149394,
1149478-1149573,1149676-1149724,1149850-1150088,
1150547-1150618,1150694-1150804,1150930-1151282,
1151377-1151464,1151691-1151789,1151860-1151991,
1152119-1152222,1153179-1153215,1153334-1153367,
1153451-1153467
Length = 1006
Score = 28.3 bits (60), Expect = 8.5
Identities = 22/72 (30%), Positives = 30/72 (41%)
Frame = -3
Query: 754 FATGGEENDLKVWRVGESQPTFSAKNLAHDWLQLRQPVWVTDLVFVPGEGGRVVAVCSRH 575
F GGE ++ S FS D L +PV DL+F P V +RH
Sbjct: 857 FKPGGELSNFDDLLKERSATNFSVVKKCFDGASLARPVHSCDLLFFP-------IVKNRH 909
Query: 574 GYVRLYDTRSQR 539
+V D ++QR
Sbjct: 910 WFVFAIDLKAQR 921
>03_02_0594 -
9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 744 PVANNVSSLQTLILSSFPPVKISSFASSPHTLTVP 848
PVA+ + TL+L P++IS P LTVP
Sbjct: 200 PVADKLMVAATLVLLCTKPLEISLLRDGPWLLTVP 234
>02_05_0098 -
25807993-25808193,25808629-25808710,25808891-25808978,
25809062-25809133,25809388-25809556
Length = 203
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -3
Query: 193 DDVTEPADDMDAIFETMETVGDPGPVSKRSKPSLEGSTEVVEDTDAAIAKL 41
DD PADD A+ +E V D K + + T D D A+AK+
Sbjct: 39 DDTEPPADDSKALVVFVEKVADKPHAEKATATAT--PTRTSNDRDIALAKV 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,023,232
Number of Sequences: 37544
Number of extensions: 567833
Number of successful extensions: 2934
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 2692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2932
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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