Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d11
         (876 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    26   1.3  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            25   2.3  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            25   2.3  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   3.0  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   4.0  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         25   4.0  
AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein prot...    24   5.3  
U21917-1|AAA73920.1|  271|Anopheles gambiae serine protease prot...    23   9.2  
AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.           23   9.2  
AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.           23   9.2  

>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 577 VGSRRLPPCPPRRGQTPGRSPRP 645
           +GS   PP PP    +PG  PRP
Sbjct: 780 IGSPPPPPPPPPSSLSPGGVPRP 802


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 759  HYLLQAAKKTI*KFGASASPSQRSLPRTWPTIGSNYASRSG*PTWCLSPARG 604
            H       +TI  FG + SP    L RTW  +   Y ++SG  T   +P  G
Sbjct: 1850 HEQADTFSRTIPFFGGNFSPEHTELQRTW-GMRYEYDNQSGLLTLKRTPDAG 1900


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 759  HYLLQAAKKTI*KFGASASPSQRSLPRTWPTIGSNYASRSG*PTWCLSPARG 604
            H       +TI  FG + SP    L RTW  +   Y ++SG  T   +P  G
Sbjct: 1851 HEQADTFSRTIPFFGGNFSPEHTELQRTW-GMRYEYDNQSGLLTLKRTPDAG 1901


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
 Frame = +1

Query: 595 PPCPPRR--GQTPGRSPRPAGVVGANRGPSSWQ 687
           P  PP    G  PG  PRP    G  R P   Q
Sbjct: 230 PQMPPGAVPGMQPGMQPRPPSAQGMQRPPMMGQ 262



 Score = 25.0 bits (52), Expect = 3.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 604 PPRRGQTPGRSPRP 645
           PPR GQ+P +SP P
Sbjct: 440 PPRPGQSPTQSPSP 453


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = -3

Query: 604 GRVVAVCSRHGYVRLYDTRSQRRPVQNVTFDLAATCIAPSISTRLALVGFARGQL 440
           GR+  +C + G+V +     QR     +  D   TC   +   +    G  +GQ+
Sbjct: 119 GRMALICYQDGFVLVGSVAGQRYWSSMLNLDATITCGIWTPDDQQVYFGTTQGQI 173


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 578 TRLREIVRHSLA-KEAGSERDLRLGRHLHRAQHQH 477
           + LR +V +  A +EAG + +L L  H H  QH H
Sbjct: 94  SNLRSVVANGNANREAGMKINL-LNHHQHHHQHPH 127


>AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein
           protein.
          Length = 373

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 519 PSTWPPLASRPASARVW 469
           P+ WP + S+  SA+ W
Sbjct: 352 PNMWPSMTSQTPSAKAW 368


>U21917-1|AAA73920.1|  271|Anopheles gambiae serine protease
           protein.
          Length = 271

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 80  GAALQRGLGSLADRSGVPNSLHCLEDGVHVVSGFSDVI 193
           G AL  G GSL +   V  + HC+ +G  VV   S V+
Sbjct: 70  GNALTCG-GSLIESRWVLTAAHCVYNGALVVPASSIVV 106


>AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 582 EQTATTLPPSPGTNTRSVTQTGW 650
           +QT TTL P+  T   + T T W
Sbjct: 95  DQTTTTLRPATTTLRPTTTTTDW 117


>AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 582 EQTATTLPPSPGTNTRSVTQTGW 650
           +QT TTL P+  T   + T T W
Sbjct: 95  DQTTTTLRPATTTLRPTTTTTDW 117


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 843,451
Number of Sequences: 2352
Number of extensions: 17249
Number of successful extensions: 42
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93853377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)