Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d11
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 750  ANNVSSLQTLILSSFPPVKISS 815
            A+NV+++ T + +  PPVK+ S
Sbjct: 953  ASNVTNVTTNLTTILPPVKVQS 974


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 47  EAPPQHGEDQEE 12
           E  P HGED+EE
Sbjct: 423 EVEPAHGEDREE 434


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 643 VWVTDLVFVPGEGGRVVAVCSRHGYVRLY 557
           +W  D  F  G+   +  + S + +VRLY
Sbjct: 85  IWKPDTYFYNGKHSYLHTITSPNKFVRLY 113


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -3

Query: 631 DLVFVPGEGGRVVAVCSRHGYVRLYDTRSQRRPVQNVTFDLAATCIAPSISTRLA 467
           D++ VP E  +    C    Y  ++   + RR     T +L   C++ S  + LA
Sbjct: 202 DILGVPAERHKKYYPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYLSVLA 256


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 319 YVHRYSDKELVHKQYLTSKPSCIL 248
           Y+  Y DK +++   LT K SC +
Sbjct: 142 YLWLYKDKTILYMVKLTLKLSCAM 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,868
Number of Sequences: 438
Number of extensions: 4323
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)