Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d10
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   5.1  
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    26   5.1  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   6.8  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   6.8  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.8  
SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|ch...    26   6.8  
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   9.0  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   9.0  
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    25   9.0  

>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 323 FRQHDETSSQPKLAFRRQKLEIQCAV 400
           F+ HDE ++ P L +R+ K  I C +
Sbjct: 47  FQCHDELNTHPFLPWRKAKFHIPCVI 72


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 202 CNCRTIKLNGMRSSKKIKRQ 143
           C C T+K NG+++ +KI RQ
Sbjct: 127 CMCCTVKDNGIKALEKIMRQ 146


>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 764 FASYTLNRTDVMELYNIKYAIDPTNKIVIEQ 672
           F   T +  D M  YN K + DPT+ ++ ++
Sbjct: 80  FLEATASEKDAMSYYNSKLSEDPTHTVIYKR 110


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 399 FLLCFIIHDCRWQIAKHKAFIAHVEIKTSVFEFQR 503
           FL+  I    +W   +HKAF+    I+++ FE  R
Sbjct: 298 FLISSIYEIWKWCRIRHKAFLLDEHIRSNKFEDTR 332


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 728 ELYNIKYAIDPTNKIVIEQV 669
           +LYNI+YA+ PT +I I ++
Sbjct: 621 QLYNIQYAMLPTKRISIRKL 640


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = -3

Query: 200 QLPY-DKIKRHALEQENKTPNALESCVLFYKDS--EIRITYNRGDYEIMHLRMSGP--LI 36
           Q+ Y ++ ++  LE EN+  N      L    S  E+R+ +NR ++ + +  +SGP  + 
Sbjct: 62  QVKYTEEQEKEVLEVENRLQNLKIVKDLRQNPSFRELRMPFNRSNHSLTNNLLSGPGRIT 121

Query: 35  QPNTIYY 15
            P  I+Y
Sbjct: 122 VPPVIFY 128


>SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +1

Query: 385 DPMRSFCFVSLFTIAAGKLPNTKRLLHTWKLKQVFSSFNGSKLPSSLKTLIIVFNTSCVK 564
           +P      +S+F +   ++ +  R    W L+ ++++ N   LP  + +L I+ + + +K
Sbjct: 11  NPQTKSIGISIFLMMITRVIDFSRPSLLWPLRILYATINEFNLPWFIYSLTIL-DLTVLK 69

Query: 565 IIELTTP 585
            +E  TP
Sbjct: 70  YVEPATP 76


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 722 YNIKYAIDPTNKIVIEQVDNVDAFVHILEPG 630
           Y  KYAI+  ++ +  ++ ++   V I+EPG
Sbjct: 115 YGTKYAIEGISEALTWEMQSIGVKVKIIEPG 145


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
 Frame = +3

Query: 411 FIIHDCRWQIAK------HKAFIAHVEIKTSVFEFQ 500
           F+I  C W I +         FI H  +   VFEFQ
Sbjct: 182 FLITSCNWTIQELEERFTKNGFIVHSTVPVPVFEFQ 217


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 722 YNIKYAIDPTNKIVIEQVDNVDAFVHILEPG 630
           Y  KYAI+  ++ +  ++ ++   V I+EPG
Sbjct: 115 YGTKYAIEGISEALTWEMQSIGVKVKIIEPG 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,597
Number of Sequences: 5004
Number of extensions: 71066
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)