Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d10
         (766 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            26   1.1  
AY062207-1|AAL58568.1|  504|Anopheles gambiae cytochrome P450 CY...    25   2.6  
AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    24   5.9  
DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein O-fucosylt...    23   7.8  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 196 CRTIKLNGMRSSKKIKRQTRWSLVCYFTKIQKYAS 92
           C +  L G +S+KK K  +RW LV   +K   YA+
Sbjct: 554 CASWPLCGEKSAKKRKLPSRWYLVHEESKYGAYAN 588


>AY062207-1|AAL58568.1|  504|Anopheles gambiae cytochrome P450
           CYP6S2 protein.
          Length = 504

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 242 HGRRSAPLCVPTAETLLEFPSPVAAIRFRQHDETSSQPKLAFRRQKLE 385
           H   S P  +P  E + E    + +    QHD T     LAF+ ++ E
Sbjct: 373 HRMTSQPYQLPNGEVIPEGVGVIISNLAFQHDPTLFPDPLAFKPERFE 420


>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = +3

Query: 660 HIVDLLYYNFICWIDCIF 713
           H++D++Y   +CW+   +
Sbjct: 441 HVLDVIYSQTLCWLGTFY 458


>DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein
           O-fucosyltransferase 1 protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 239 QHGRRSAPLCVPTAETLL 292
           +HG+ +A LC+P  +T++
Sbjct: 266 EHGQLTAELCMPGRDTII 283


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 865,708
Number of Sequences: 2352
Number of extensions: 18968
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79418373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)