Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d07
         (866 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   4.1  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    22   5.4  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   7.2  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   7.2  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.5  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 469 DKQRTPRATHDNR 431
           D+ RTPR  HD R
Sbjct: 210 DESRTPRPKHDGR 222


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
 Frame = -3

Query: 705 TGHIARNCPEGGR-------ESATQTCYNC 637
           +G +  NCP GG+       E+A + C +C
Sbjct: 19  SGCLITNCPRGGKRSKFAISENAVKPCVSC 48


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
 Frame = -3

Query: 684 CPEG-GRESATQTC---YNCNKSGHISRNCPDG 598
           CPE  G  +  + C   Y CN      + CPDG
Sbjct: 39  CPEKYGFFADAEQCDKYYECNDGQITEKLCPDG 71


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 326 EQTRTRLNAPVYIQVNSRTSLFSLW-RGRRSAS 421
           +Q +T LNAP+Y    S  S    W  G  SAS
Sbjct: 208 DQPQTGLNAPLYGNSMSVDSSVQSWLSGGASAS 240


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 342 ASTRPSIYKSTVEPHSSVCGADAALHLYCNRLSCVARGVL 461
           A+  P    S+  P S    A A LH+   R +    GV+
Sbjct: 31  AAAPPPATTSSGSPASVASNASAPLHIPAKRAAYDCEGVI 70


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,643
Number of Sequences: 336
Number of extensions: 4255
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23893023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)