Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d05
         (141 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin...    47   9e-05
UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protei...    31   6.5  
UniRef50_A0DH03 Cluster: Chromosome undetermined scaffold_5, who...    31   6.5  

>UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin -
           Spodoptera littoralis nuclear polyhedrosis virus (SlNPV)
          Length = 249

 Score = 46.8 bits (106), Expect = 9e-05
 Identities = 17/22 (77%), Positives = 21/22 (95%)
 Frame = +3

Query: 69  YSYTPTIGRTYVYDNKYYKNLG 134
           Y+Y+P +G+TYVYDNKYYKNLG
Sbjct: 8   YNYSPHLGKTYVYDNKYYKNLG 29


>UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protein;
           n=4; Nucleopolyhedrovirus|Rep: Polyhedrin, major
           occlusion body protein - Neodiprion lecontii NPV
          Length = 247

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 84  TIGRTYVYDNKYYKNLG 134
           T  ++Y+YDNKYY+ LG
Sbjct: 11  TSAKSYIYDNKYYRGLG 27


>UniRef50_A0DH03 Cluster: Chromosome undetermined scaffold_5, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_5, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2443

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
 Frame = -1

Query: 126  FCNIYCRTR----KYARWWGCMNNS 64
            +CNI+ RTR      A +WGCMN S
Sbjct: 1648 YCNIWYRTRYSCENIANYWGCMNTS 1672


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,930,776
Number of Sequences: 1657284
Number of extensions: 1494528
Number of successful extensions: 4160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4160
length of database: 575,637,011
effective HSP length: 27
effective length of database: 530,890,343
effective search space used: 10086916517
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)