Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d05
         (141 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   1.8  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    24   2.4  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    24   3.2  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    23   4.2  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         23   7.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    23   7.3  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    22   9.6  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    22   9.6  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    22   9.6  

>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 70  IHTPPPSGVLTCTTINITKTW 132
           I+ PP + ++TC+T  +   W
Sbjct: 300 INNPPSNNIVTCSTDGLVHIW 320


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 20  DFRXSFVXKKPINNAEL 70
           +FR   V KKPINN +L
Sbjct: 352 EFRNWHVSKKPINNTDL 368


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 64  RIIHTPPPSGVLTCTTINITKTW 132
           +++ TP P+ + +   INI++ W
Sbjct: 323 QLVRTPSPASLSSSELINISRDW 345


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 76  TPPPSGVLTCTTINITKT 129
           TP P+G  + TT+N T+T
Sbjct: 727 TPKPNGTNSVTTLNRTQT 744


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 126 FCNIYCRTRKYARWWG 79
           F   YC+T K  RW G
Sbjct: 283 FTGNYCQTEKGVRWLG 298


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 129 SFCNIYCRTRKYARWWG 79
           +F N+Y  + +Y R+WG
Sbjct: 222 NFTNVYNTSCEYPRFWG 238


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 72  SYTPTIGRTYVYD 110
           SY   +GRTY++D
Sbjct: 289 SYCSNVGRTYLFD 301


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 81  PTIGRTYVYDN 113
           PTI +TYVY N
Sbjct: 562 PTITKTYVYSN 572


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 70  IHTPPPSGVL 99
           IH PPPSG L
Sbjct: 171 IHVPPPSGKL 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 557,250
Number of Sequences: 5004
Number of extensions: 6523
Number of successful extensions: 26
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)