Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10d05
         (141 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   1.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   1.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   2.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    19   4.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    19   7.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    18   9.5  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 84  TIGRTYVYDNKYYKNLGC 137
           ++   Y Y+N  YK L C
Sbjct: 84  SLSNNYNYNNNNYKKLYC 101


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 84  TIGRTYVYDNKYYKNLGC 137
           ++   Y Y+N  YK L C
Sbjct: 84  SLSNNYNYNNNNYKKLYC 101


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 84  TIGRTYVYDNKYYKNLGC 137
           ++   Y Y+N  YK L C
Sbjct: 84  SLSNNYNYNNNNYKKLYC 101


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
 Frame = +1

Query: 67   IIHTPPPSG--VLTCTTIN 117
            I+H PP S    LT TT N
Sbjct: 1362 IVHAPPHSPQITLTATTTN 1380


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 4/13 (30%), Positives = 9/13 (69%)
 Frame = -1

Query: 126 FCNIYCRTRKYAR 88
           +C +YC  +K+ +
Sbjct: 212 YCRLYCYAQKHVK 224


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
          protein.
          Length = 377

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 74 IHPHHRAY 97
          +HPH RA+
Sbjct: 42 VHPHWRAF 49


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 63  PNYSYTPTIGR 95
           PNYS   TIG+
Sbjct: 516 PNYSVNWTIGQ 526


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,301
Number of Sequences: 438
Number of extensions: 499
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 27
effective length of database: 134,517
effective search space used:  2555823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)