Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10c24
(295 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 124 2e-29
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 122 4e-29
07_01_0385 - 2871628-2872131 28 1.5
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 2.0
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 27 2.0
07_03_1237 + 25073010-25073513 27 3.5
02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776 27 3.5
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 26 4.6
02_01_0679 - 5048653-5051394 26 4.6
07_03_0039 - 12718972-12720699 26 6.1
02_05_1152 + 34494423-34494586,34494725-34494781,34494851-344949... 25 8.0
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005... 25 8.0
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 124 bits (298), Expect = 2e-29
Identities = 53/85 (62%), Positives = 65/85 (76%)
Frame = -3
Query: 257 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKR 78
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84
Query: 77 CKRTVAGGAWVFSTTAASSCRSAVR 3
C + AGGA+ +T +A + RS +R
Sbjct: 85 CGKVKAGGAYTMNTASAVTVRSTIR 109
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 122 bits (295), Expect = 4e-29
Identities = 53/82 (64%), Positives = 63/82 (76%)
Frame = -3
Query: 248 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKR 69
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C +
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92
Query: 68 TVAGGAWVFSTTAASSCRSAVR 3
AGGA+ +T +A + RS +R
Sbjct: 93 VKAGGAYTMNTASAVTVRSTIR 114
>07_01_0385 - 2871628-2872131
Length = 167
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -3
Query: 146 YTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 48
+ C FC K K +G K VAGG+W
Sbjct: 47 FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 167 EVTQHAKYTCSFCGKDAM 114
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>09_06_0303 -
22149214-22149474,22150099-22150236,22150856-22151100,
22151344-22151809
Length = 369
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Frame = -3
Query: 284 STFVSERFTKMAKRTKKVG-ITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKR 108
S + RF ++V K G Y L K AKYT G A R
Sbjct: 60 SDMMKSRFEAFKANARQVNEFNKKEGMSYTLGLNKFSDMSYEEFAAKYTGGMPGSIADDR 119
Query: 107 SCVGIWSCKRCKRTV 63
S G SCK ++ V
Sbjct: 120 SSAGAVSCKLREKNV 134
>07_03_1237 + 25073010-25073513
Length = 167
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 113 KRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 18
KR G+ C C RT++GG++ + ++C
Sbjct: 24 KRGAAGV--CNVCDRTISGGSYGYRCGGGAAC 53
>02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776
Length = 80
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -3
Query: 293 FSLSTFVSERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAK 147
+ L ++ + + K + G+T + +RY LR+ ++K+EV K
Sbjct: 11 YELEVYMLTIYLLLHKNQVRHGVTARRTSRYYVVLRRELRKLEVVGKVK 59
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 26.2 bits (55), Expect = 4.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 289 LCQLLYRRGLPKWP 248
+C LY+R PKWP
Sbjct: 768 VCMSLYKRAYPKWP 781
>02_01_0679 - 5048653-5051394
Length = 913
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = -1
Query: 283 QLLYRRGLPKWPNVPKRLELLANMAHVTV-----PLYVKWSK-RWK 164
++L LP VPK LELLA++ + V L V+W + WK
Sbjct: 857 EVLLLLSLPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902
>07_03_0039 - 12718972-12720699
Length = 575
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 40 ENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLTILRR 192
EN A +LH +D + QERF L + + C + S+F IL +
Sbjct: 416 ENKIATKIIAVLHSNRDTL--QERFDCLLERGLEYKMLCQIVSVFPKILNQ 464
>02_05_1152 +
34494423-34494586,34494725-34494781,34494851-34494908,
34494989-34495088,34495270-34495383,34495588-34495810,
34496112-34496246,34496575-34496679,34496906-34497001,
34497387-34497516,34497933-34497983,34498538-34498648,
34499267-34499376,34499490-34499655,34499740-34499820,
34499907-34499975,34500099-34500212,34500699-34500760,
34500894-34500990,34501152-34501271
Length = 720
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 293 FSLSTFVSERFTKMAKRTKKVGITGKYGTRYGASLRKMV 177
FS+ S RF+++ R + I+G G + LRK V
Sbjct: 166 FSIEIAESSRFSELLLRIDTMTISGMVGMTEASDLRKKV 204
>01_06_0787 -
31999632-32000045,32000128-32000214,32000295-32000584,
32000670-32000844,32000930-32001142,32001227-32001328,
32001418-32001822,32001922-32002134,32002312-32002357,
32002602-32002867,32003936-32004012,32004095-32004170,
32004339-32004418,32004945-32005036,32005132-32005171,
32005301-32005400,32005815-32005962,32006071-32006153,
32006207-32006383
Length = 1027
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -3
Query: 128 GKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAV 6
GKD + +CV ++ + + GG WV + C S +
Sbjct: 880 GKD--RTNCVTAYAARPEEEEERGGKWVLQDVCTNPCESTI 918
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,856,111
Number of Sequences: 37544
Number of extensions: 175924
Number of successful extensions: 449
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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